RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040002523	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5579 bases	Strand	Minus strand
Position	LUXQ01009020.1 : 459597 - 465175	RNA binding domain	eIF3g , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040000905	eIF3g	PF12353	3.3e-42	1
ENSSSCP00040000905	RRM_1	PF00076	5.8e-08	2
ENSSSCP00040000919	eIF3g	PF12353	1.1e-40	1
ENSSSCP00040000919	RRM_1	PF00076	2.3e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00040003081	2193	383aa	ENSSSCP00040000905
-	ENSSSCT00040003123	1137	331aa	ENSSSCP00040000919

Gene Model

Click here to download ENSSSCG00040002523's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040002523's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040002523

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	77.2846	75.1958	sus_scrofa_usmarc	ENSSSCP00070035426	92.5	90
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	99.7389	99.7389	sus_scrofa_tibetan	ENSSSCP00015036886	99.7389	99.7389
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	75.718	73.6292	sus_scrofa	ENSSSCP00000063344	82.153	79.8867
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	99.7389	99.7389	sus_scrofa_wuzhishan	ENSSSCP00005030466	99.7389	99.7389
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	100	100	sus_scrofa_berkshire	ENSSSCP00065018520	100	100
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	77.2846	75.1958	ovis_aries_rambouillet	ENSOARP00020004615	82.4513	80.2228
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	99.7389	99.7389	sus_scrofa_jinhua	ENSSSCP00060025241	99.7389	99.7389
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	99.7389	99.7389	sus_scrofa_rongchang	ENSSSCP00030018246	99.7389	99.7389
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	100	100	sus_scrofa_pietrain	ENSSSCP00055047284	100	100
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	31.8538	24.5431	equus_caballus	ENSECAP00000024849	68.5393	52.809
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	100	100	sus_scrofa_largewhite	ENSSSCP00025030601	100	100
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	77.2846	75.1958	bos_taurus	ENSBTAP00000003545	92.5	90
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	100	100	sus_scrofa_hampshire	ENSSSCP00035007611	100	100
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	99.7389	99.7389	sus_scrofa_bamei	ENSSSCP00050015618	99.7389	99.7389
ENSSSCG00040002523	sus_scrofa_meishan	ENSSSCP00040000905	100	100	sus_scrofa_landrace	ENSSSCP00045049022	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression