RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040001697	Gene ID		Accession	-
Symbol	ERCC3	Alias	-	Full Name	NA
Status	Confidence	Length	40906 bases	Strand	Plus strand
Position	LUXQ01012439.1 : 143853 - 184758	RNA binding domain	ResIII
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040000553	ResIII	PF04851	2.4e-15	1
ENSSSCP00040000545	ResIII	PF04851	5.3e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ERCC3-201	ENSSSCT00040001999	1883	175aa	ENSSSCP00040000536
ERCC3-202	ENSSSCT00040002030	8474	801aa	ENSSSCP00040000545
ERCC3-203	ENSSSCT00040002048	8417	782aa	ENSSSCP00040000553

Gene Model

Click here to download ENSSSCG00040001697's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040001697's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040001697

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.628	97.5031	sus_scrofa_usmarc	ENSSSCP00070003134	100	99.8721
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_tibetan	ENSSSCP00015046641	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa	ENSSSCP00000045988	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.628	97.5031	sus_scrofa_wuzhishan	ENSSSCP00005002170	100	99.8721
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_berkshire	ENSSSCP00065007378	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.1286	95.7553	ovis_aries_rambouillet	ENSOARP00020010665	99.4885	98.0818
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_jinhua	ENSSSCP00060027126	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_rongchang	ENSSSCP00030022272	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	86.2672	83.6454	sus_scrofa_pietrain	ENSSSCP00055020647	84.0633	81.5085
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	85.0187	82.0225	equus_caballus	ENSECAP00000070061	87.871	84.7742
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_largewhite	ENSSSCP00025017915	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.1286	95.6305	bos_taurus	ENSBTAP00000027687	99.4885	97.954
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.628	97.5031	sus_scrofa_hampshire	ENSSSCP00035038157	100	99.8721
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	100	100	sus_scrofa_bamei	ENSSSCP00050008821	100	100
ENSSSCG00040001697	sus_scrofa_meishan	ENSSSCP00040000545	97.628	97.5031	sus_scrofa_landrace	ENSSSCP00045019860	100	99.8721

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression