RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00040001456	Gene ID	100625226	Accession	-
Symbol	GTPBP4	Alias	-	Full Name	GTP binding protein 4
Status	Confidence	Length	18760 bases	Strand	Plus strand
Position	LUXQ01003371.1 : 247625 - 266384	RNA binding domain	NOG1 , NOGCT , MMR_HSR1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00040000457	NOG1	PF06858	1.3e-26	1
ENSSSCP00040000457	NOGCT	PF08155	8.9e-21	2
ENSSSCP00040000457	MMR_HSR1	PF01926	1.1e-17	3
ENSSSCP00040000450	NOG1	PF06858	1.3e-26	1
ENSSSCP00040000450	NOGCT	PF08155	2.6e-21	2
ENSSSCP00040000450	MMR_HSR1	PF01926	1.1e-17	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GTPBP4-201	ENSSSCT00040001751	2493	634aa	ENSSSCP00040000450
GTPBP4-202	ENSSSCT00040001768	2421	632aa	ENSSSCP00040000457

Gene Model

Click here to download ENSSSCG00040001456's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00040001456's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040036864	33.8501	16.2791	sus_scrofa_meishan	ENSSSCP00040000450	20.6625	9.93691
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040006962	31.7848	17.3594	sus_scrofa_meishan	ENSSSCP00040000450	20.5047	11.1987
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040019728	35.9813	17.5234	sus_scrofa_meishan	ENSSSCP00040000450	24.2902	11.8297
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040002541	39.782	21.2534	sus_scrofa_meishan	ENSSSCP00040000450	23.0284	12.3028

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_usmarc	ENSSSCP00070008581	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	95.7413	94.9527	sus_scrofa_tibetan	ENSSSCP00015016558	95.2904	94.5055
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa	ENSSSCP00000024246	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	96.6877	95.8991	sus_scrofa_wuzhishan	ENSSSCP00005006655	96.9937	96.2025
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_berkshire	ENSSSCP00065015390	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	97.0032	93.3754	ovis_aries_rambouillet	ENSOARP00020011165	88.3621	85.0575
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_jinhua	ENSSSCP00060042751	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_rongchang	ENSSSCP00030045915	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_pietrain	ENSSSCP00055039351	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	92.5868	87.6972	equus_caballus	ENSECAP00000002904	97.3466	92.2056
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_largewhite	ENSSSCP00025011173	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	97.0032	93.2177	bos_taurus	ENSBTAP00000019864	97.0032	93.2177
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	24.9211	21.4511	bos_taurus	ENSBTAP00000066079	90.8046	78.1609
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_hampshire	ENSSSCP00035036354	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_bamei	ENSSSCP00050000926	100	100
ENSSSCG00040001456	sus_scrofa_meishan	ENSSSCP00040000450	100	100	sus_scrofa_landrace	ENSSSCP00045029393	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression