RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00035081019	Gene ID	414388	Accession	-
Symbol	TPM3	Alias	-	Full Name	tropomyosin 3
Status	Confidence	Length	30640 bases	Strand	Plus strand
Position	LUXS01026167.1 : 2626180 - 2656819	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035048750	Tropomyosin	PF00261	1.5e-101	1
ENSSSCP00035048724	Tropomyosin	PF00261	2.3e-97	1
ENSSSCP00035048759	Tropomyosin	PF00261	1e-95	1
ENSSSCP00035048762	Tropomyosin	PF00261	2.6e-90	1
ENSSSCP00035048756	Tropomyosin	PF00261	1.3e-89	1
ENSSSCP00035048791	Tropomyosin	PF00261	1.8e-76	1
ENSSSCP00035048770	Tropomyosin	PF00261	2.6e-69	1
ENSSSCP00035048770	Tropomyosin	PF00261	2.6e-69	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TPM3-201	ENSSSCT00035111304	2278	284aa	ENSSSCP00035048724
TPM3-202	ENSSSCT00035111331	3186	284aa	ENSSSCP00035048750
TPM3-203	ENSSSCT00035111338	2196	248aa	ENSSSCP00035048756
TPM3-204	ENSSSCT00035111344	2846	254aa	ENSSSCP00035048759
TPM3-205	ENSSSCT00035111348	2762	247aa	ENSSSCP00035048762
TPM3-207	ENSSSCT00035111357	684	227aa	ENSSSCP00035048770
TPM3-206	ENSSSCT00035111386	732	243aa	ENSSSCP00035048791

Gene Model

Click here to download ENSSSCG00035081019's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035081019's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035081019	sus_scrofa_hampshire	ENSSSCP00035006664	63.0435	51.087	sus_scrofa_hampshire	ENSSSCP00035048750	20.4225	16.5493
ENSSSCG00035081019	sus_scrofa_hampshire	ENSSSCP00035020881	91.9014	80.6338	sus_scrofa_hampshire	ENSSSCP00035048750	91.9014	80.6338
ENSSSCG00035081019	sus_scrofa_hampshire	ENSSSCP00035021033	74.6518	65.7382	sus_scrofa_hampshire	ENSSSCP00035048750	94.3662	83.0986
ENSSSCG00035081019	sus_scrofa_hampshire	ENSSSCP00035040065	65.508	57.2192	sus_scrofa_hampshire	ENSSSCP00035048750	86.2676	75.3521

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035081019	sus_scrofa_hampshire	ENSSSCP00035048750	99.6479	99.6479	sus_scrofa_jinhua	ENSSSCP00060036188	99.6479	99.6479

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression