Description

Ensembl ID ENSSSCG00035079261 Gene ID Accession -
Symbol PNPT1 Alias - Full Name NA
Status Confidence Length 44295 bases Strand Plus strand
Position LUXS01067259.1 : 408034 - 452328 RNA binding domain RNase_PH , RNase_PH_C , PNPase , KH_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00035046909 RNase_PH PF01138 1.1e-39 1
ENSSSCP00035046909 RNase_PH PF01138 1.1e-39 2
ENSSSCP00035046909 RNase_PH_C PF03725 5.9e-16 3
ENSSSCP00035046909 PNPase PF03726 1.5e-07 4
ENSSSCP00035046909 KH_1 PF00013 9.6e-08 5
ENSSSCP00035046920 RNase_PH PF01138 7.5e-37 1
ENSSSCP00035046920 RNase_PH PF01138 7.5e-37 2
ENSSSCP00035046920 RNase_PH_C PF03725 5.8e-16 3
ENSSSCP00035046920 PNPase PF03726 1.5e-07 4
ENSSSCP00035046920 KH_1 PF00013 8.9e-08 5
ENSSSCP00035046974 RNase_PH PF01138 4.3e-34 1
ENSSSCP00035046974 RNase_PH PF01138 4.3e-34 2
ENSSSCP00035046974 RNase_PH_C PF03725 4.9e-16 3
ENSSSCP00035046974 PNPase PF03726 1.4e-07 4
ENSSSCP00035046974 KH_1 PF00013 8.2e-08 5
ENSSSCP00035046937 RNase_PH PF01138 5.9e-26 1
ENSSSCP00035046937 RNase_PH PF01138 5.9e-26 2
ENSSSCP00035046937 RNase_PH_C PF03725 4.6e-16 3
ENSSSCP00035046937 PNPase PF03726 1.3e-07 4
ENSSSCP00035046937 KH_1 PF00013 7.6e-08 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PNPT1-201 ENSSSCT00035108307 4793 784aa ENSSSCP00035046909
PNPT1-202 ENSSSCT00035108326 4748 769aa ENSSSCP00035046920
PNPT1-203 ENSSSCT00035108357 4580 713aa ENSSSCP00035046937
PNPT1-204 ENSSSCT00035108438 5289 729aa ENSSSCP00035046974

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035079261

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofaENSSSCP00000045253100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690998.979698.7245sus_scrofa_berkshireENSSSCP0006500375298.602398.3482
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690997.704194.7704equus_caballusENSECAP0000001822393.528790.7204
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690997.959295.0255bos_taurusENSBTAP0000001172998.084395.1469
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_usmarcENSSSCP00070051975100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_wuzhishanENSSSCP00005037735100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690998.979698.7245sus_scrofa_rongchangENSSSCP0003004837498.602398.3482
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690993.112292.2194sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_tibetanENSSSCP00015027328100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690998.214395.7908ovis_aries_rambouilletENSOARP0002000019298.214395.7908
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP0003504690993.112292.2194sus_scrofa_bameiENSSSCP0005001884294.193693.2903
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_meishanENSSSCP00040033567100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_largewhiteENSSSCP00025042647100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_landraceENSSSCP00045021527100100
ENSSSCG00035079261sus_scrofa_hampshireENSSSCP00035046909100100sus_scrofa_pietrainENSSSCP00055039820100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression