RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035077090	Gene ID	100627477	Accession	-
Symbol	POLR1D	Alias	-	Full Name	RNA polymerase I and III subunit D
Status	Confidence	Length	45718 bases	Strand	Plus strand
Position	LUXS01029539.1 : 24922 - 70639	RNA binding domain	RNA_pol_L_2 , RNA_pol_L
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035045045	RNA_pol_L_2	PF13656	1.4e-27	1
ENSSSCP00035045045	RNA_pol_L	PF01193	7.6e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR1D-201	ENSSSCT00035105003	729	133aa	ENSSSCP00035045045
POLR1D-202	ENSSSCT00035105114	784	120aa	ENSSSCP00035045098

Gene Model

Click here to download ENSSSCG00035077090's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035077090's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035003528	37.1951	21.9512	sus_scrofa_hampshire	ENSSSCP00035045045	45.8647	27.0677
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035027323	42.1429	22.8571	sus_scrofa_hampshire	ENSSSCP00035045045	44.3609	24.0602

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa	ENSSSCP00000009932	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_berkshire	ENSSSCP00065038620	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	96.2406	93.2331	bos_taurus	ENSBTAP00000044471	96.2406	93.2331
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	96.2406	93.2331	bos_taurus	ENSBTAP00000054585	96.2406	93.2331
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_usmarc	ENSSSCP00070016555	46.6667	46.6667
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	87.218	87.218	sus_scrofa_wuzhishan	ENSSSCP00005006478	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_rongchang	ENSSSCP00030010974	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_jinhua	ENSSSCP00060016318	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_tibetan	ENSSSCP00015006446	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	96.2406	93.985	ovis_aries_rambouillet	ENSOARP00020015065	96.2406	93.985
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_bamei	ENSSSCP00050001753	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_meishan	ENSSSCP00040012674	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_largewhite	ENSSSCP00025030269	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_landrace	ENSSSCP00045020702	100	100
ENSSSCG00035077090	sus_scrofa_hampshire	ENSSSCP00035045045	100	100	sus_scrofa_pietrain	ENSSSCP00055038618	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression