RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035076323	Gene ID		Accession	-
Symbol	AGO2	Alias	-	Full Name	NA
Status	Confidence	Length	95219 bases	Strand	Plus strand
Position	LUXS01048687.1 : 1452893 - 1548111	RNA binding domain	Piwi , PAZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035044726	Piwi	PF02171	3.7e-115	1
ENSSSCP00035044726	PAZ	PF02170	1.2e-27	2
ENSSSCP00035044505	Piwi	PF02171	4e-115	1
ENSSSCP00035044505	PAZ	PF02170	1.3e-27	2
ENSSSCP00035044794	Piwi	PF02171	4e-115	1
ENSSSCP00035044794	PAZ	PF02170	1.3e-27	2
ENSSSCP00035044904	Piwi	PF02171	4.1e-115	1
ENSSSCP00035044904	PAZ	PF02170	1.3e-27	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AGO2-201	ENSSSCT00035103959	5622	861aa	ENSSSCP00035044505
AGO2-202	ENSSSCT00035104392	5799	839aa	ENSSSCP00035044726
AGO2-203	ENSSSCT00035104501	5563	861aa	ENSSSCP00035044794
AGO2-204	ENSSSCT00035104712	5593	871aa	ENSSSCP00035044904

Gene Model

Click here to download ENSSSCG00035076323's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035076323's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035011484	86.4465	76.5376	sus_scrofa_hampshire	ENSSSCP00035044904	87.1412	77.1527
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035014529	88.5057	80.2299	sus_scrofa_hampshire	ENSSSCP00035044904	88.4041	80.1378
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035015531	85.1977	76.6102	sus_scrofa_hampshire	ENSSSCP00035044904	86.5672	77.8416

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.2595	93.8002	sus_scrofa	ENSSSCP00000059624	93.9359	93.4783
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	99.7704	99.7704	sus_scrofa_berkshire	ENSSSCP00065027276	99.7704	99.7704
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	95.4076	94.7187	equus_caballus	ENSECAP00000060838	90.919	90.2626
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.8335	94.2595	bos_taurus	ENSBTAP00000002068	96.0465	95.4651
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.7187	94.0299	sus_scrofa_usmarc	ENSSSCP00070003456	95.8188	95.1219
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	98.2778	98.2778	sus_scrofa_wuzhishan	ENSSSCP00005012235	99.6508	99.6508
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.7187	94.2595	sus_scrofa_rongchang	ENSSSCP00030002346	93.9636	93.508
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	99.7704	99.7704	sus_scrofa_jinhua	ENSSSCP00060039785	99.7704	99.7704
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.8335	94.2595	ovis_aries_rambouillet	ENSOARP00020006570	96.0465	95.4651
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.7187	94.2595	sus_scrofa_bamei	ENSSSCP00050028707	93.9636	93.508
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	100	100	sus_scrofa_meishan	ENSSSCP00040013642	100	100
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	99.7704	99.7704	sus_scrofa_largewhite	ENSSSCP00025041832	99.7704	99.7704
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	94.7187	94.2595	sus_scrofa_landrace	ENSSSCP00045047009	93.9636	93.508
ENSSSCG00035076323	sus_scrofa_hampshire	ENSSSCP00035044904	100	100	sus_scrofa_pietrain	ENSSSCP00055036915	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression