RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035070142	Gene ID		Accession	-
Symbol	TPM1	Alias	-	Full Name	NA
Status	Confidence	Length	32437 bases	Strand	Minus strand
Position	LUXS01077551.1 : 177119 - 209555	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035040339	Tropomyosin	PF00261	3e-100	1
ENSSSCP00035040388	Tropomyosin	PF00261	1.2e-96	1
ENSSSCP00035040397	Tropomyosin	PF00261	1.3e-92	1
ENSSSCP00035040310	Tropomyosin	PF00261	4.3e-91	1
ENSSSCP00035040298	Tropomyosin	PF00261	4.8e-91	1
ENSSSCP00035040065	Tropomyosin	PF00261	1.2e-88	1
ENSSSCP00035039994	Tropomyosin	PF00261	5.6e-88	1
ENSSSCP00035040358	Tropomyosin	PF00261	4.1e-86	1
ENSSSCP00035040091	Tropomyosin	PF00261	7.7e-85	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TPM1-201	ENSSSCT00035095101	1612	285aa	ENSSSCP00035039994
TPM1-202	ENSSSCT00035095270	3159	374aa	ENSSSCP00035040065
TPM1-203	ENSSSCT00035095322	1033	291aa	ENSSSCP00035040091
TPM1-205	ENSSSCT00035095782	3753	351aa	ENSSSCP00035040298
TPM1-204	ENSSSCT00035095812	3333	343aa	ENSSSCP00035040310
TPM1-206	ENSSSCT00035095883	1519	309aa	ENSSSCP00035040339
TPM1-207	ENSSSCT00035095924	3654	370aa	ENSSSCP00035040358
TPM1-209	ENSSSCT00035096018	2373	351aa	ENSSSCP00035040388
TPM1-208	ENSSSCT00035096036	1922	284aa	ENSSSCP00035040397

Gene Model

Click here to download ENSSSCG00035070142's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035070142's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035006664	61.9565	45.6522	sus_scrofa_hampshire	ENSSSCP00035040065	15.2406	11.2299
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035020881	84.1549	72.5352	sus_scrofa_hampshire	ENSSSCP00035040065	63.9037	55.0802
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035021033	67.1309	54.3175	sus_scrofa_hampshire	ENSSSCP00035040065	64.4385	52.139
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035048750	86.2676	75.3521	sus_scrofa_hampshire	ENSSSCP00035040065	65.508	57.2192

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	95.1872	94.1176	sus_scrofa	ENSSSCP00000063243	96.2162	95.1351
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	87.9679	84.2246	sus_scrofa_berkshire	ENSSSCP00065007607	84.7938	81.1856
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	44.385	36.8984	equus_caballus	ENSECAP00000028416	76.4977	63.5945
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	56.9519	52.139	equus_caballus	ENSECAP00000025502	86.9388	79.5918
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	18.4492	13.9037	equus_caballus	ENSECAP00000033212	64.486	48.5981
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	63.369	54.5455	bos_taurus	ENSBTAP00000063733	51.86	44.639
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	68.4492	63.1016	sus_scrofa_usmarc	ENSSSCP00070020405	62.439	57.561
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	68.984	63.9037	sus_scrofa_wuzhishan	ENSSSCP00005022158	71.4681	66.205
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	67.1123	59.0909	sus_scrofa_rongchang	ENSSSCP00030020104	71.51	62.963
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	69.5187	63.369	sus_scrofa_jinhua	ENSSSCP00060042834	74.0741	67.5214
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	68.4492	63.369	sus_scrofa_tibetan	ENSSSCP00015013735	70.9141	65.651
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	66.0428	59.0909	ovis_aries_rambouillet	ENSOARP00020011536	66.5768	59.5687
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	67.1123	59.0909	sus_scrofa_bamei	ENSSSCP00050040813	71.51	62.963
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	67.1123	59.0909	sus_scrofa_meishan	ENSSSCP00040039719	71.51	62.963
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	91.4438	87.7005	sus_scrofa_largewhite	ENSSSCP00025048314	82.6087	79.2271
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	97.3262	95.4545	sus_scrofa_landrace	ENSSSCP00045012201	96.5517	94.695
ENSSSCG00035070142	sus_scrofa_hampshire	ENSSSCP00035040065	65.2406	57.754	sus_scrofa_pietrain	ENSSSCP00055048308	62.8866	55.6701

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression