| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00035068498 | Gene ID |
|
Accession |
- |
| Symbol |
PRPF38A |
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
28167 bases |
Strand |
Minus strand |
| Position |
LUXS01076039.1 : 7569417 - 7597583 |
RNA binding domain |
PRP38 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00035038793 |
PRP38 |
PF03371 |
1.9e-63 |
1 |
| ENSSSCP00035038795 |
PRP38 |
PF03371 |
2.1e-63 |
1 |
| ENSSSCP00035038787 |
PRP38 |
PF03371 |
2.4e-63 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| PRPF38A-201 |
ENSSSCT00035092448 |
2327 |
312aa |
ENSSSCP00035038787 |
| PRPF38A-202 |
ENSSSCT00035092466 |
1231 |
284aa |
ENSSSCP00035038793 |
| PRPF38A-203 |
ENSSSCT00035092478 |
2269 |
295aa |
ENSSSCP00035038795 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035068498 | | | | | | | | |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 100 | 100 | sus_scrofa | ENSSSCP00000025857 | 100 | 100 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_berkshire | ENSSSCP00065012870 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 90.7051 | 88.7821 | equus_caballus | ENSECAP00000085917 | 87.0769 | 85.2308 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 100 | 100 | bos_taurus | ENSBTAP00000003524 | 100 | 100 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070051554 | 100 | 100 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 100 | 100 | sus_scrofa_wuzhishan | ENSSSCP00005027024 | 100 | 100 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 77.2436 | 74.6795 | sus_scrofa_rongchang | ENSSSCP00030009298 | 69.2529 | 66.954 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_jinhua | ENSSSCP00060032579 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_tibetan | ENSSSCP00015029614 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 88.7821 | 88.4615 | ovis_aries_rambouillet | ENSOARP00020010068 | 93.266 | 92.9293 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_bamei | ENSSSCP00050037099 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_meishan | ENSSSCP00040043875 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.7564 | 97.4359 | sus_scrofa_largewhite | ENSSSCP00025003665 | 84.2541 | 83.9779 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045005283 | 100 | 100 |
| ENSSSCG00035068498 | sus_scrofa_hampshire | ENSSSCP00035038787 | 97.4359 | 97.4359 | sus_scrofa_pietrain | ENSSSCP00055047776 | 83.9779 | 83.9779 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
