RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035064188	Gene ID	100521436	Accession	-
Symbol	FAM172A	Alias	-	Full Name	family with sequence similarity 172 member A
Status	Confidence	Length	415825 bases	Strand	Plus strand
Position	LUXS01079001.1 : 231956 - 647780	RNA binding domain	Arb2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035035977	Arb2	PF09757	1.2e-09	1
ENSSSCP00035035981	Arb2	PF09757	1.4e-09	1
ENSSSCP00035035968	Arb2	PF09757	1.5e-09	1
ENSSSCP00035035973	Arb2	PF09757	3.9e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FAM172A-201	ENSSSCT00035086361	7296	394aa	ENSSSCP00035035963
FAM172A-202	ENSSSCT00035086370	4330	416aa	ENSSSCP00035035968
FAM172A-203	ENSSSCT00035086377	6928	269aa	ENSSSCP00035035973
FAM172A-204	ENSSSCT00035086381	1956	394aa	ENSSSCP00035035977
FAM172A-205	ENSSSCT00035086388	6382	407aa	ENSSSCP00035035981
FAM172A-206	ENSSSCT00035086394	4975	181aa	ENSSSCP00035035986
FAM172A-207	ENSSSCT00035086402	6007	114aa	ENSSSCP00035035992

Gene Model

Click here to download ENSSSCG00035064188's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035064188's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035016271	59.6817	38.1963	sus_scrofa_hampshire	ENSSSCP00035035968	54.0865	34.6154

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	100	100	sus_scrofa	ENSSSCP00000020251	100	100
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	90.1442	89.1827	sus_scrofa_berkshire	ENSSSCP00065003805	94.2211	93.2161
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	92.0673	88.9423	equus_caballus	ENSECAP00000045090	77.2177	74.5968
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	99.2788	98.5577	bos_taurus	ENSBTAP00000073551	99.2788	98.5577
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	93.2692	91.8269	sus_scrofa_usmarc	ENSSSCP00070014312	91.0798	89.6714
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	100	100	sus_scrofa_wuzhishan	ENSSSCP00005010816	100	100
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	100	100	sus_scrofa_rongchang	ENSSSCP00030023453	100	100
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	90.1442	89.1827	sus_scrofa_jinhua	ENSSSCP00060006083	94.2211	93.2161
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	30.2885	25.4808	sus_scrofa_tibetan	ENSSSCP00015035659	69.6133	58.5635
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	99.0385	98.3173	ovis_aries_rambouillet	ENSOARP00020008900	99.0385	98.3173
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	30.2885	25.4808	sus_scrofa_bamei	ENSSSCP00050046973	69.6133	58.5635
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	90.1442	89.1827	sus_scrofa_meishan	ENSSSCP00040021991	94.2211	93.2161
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	100	100	sus_scrofa_largewhite	ENSSSCP00025030603	100	100
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	90.1442	89.1827	sus_scrofa_landrace	ENSSSCP00045005748	94.2211	93.2161
ENSSSCG00035064188	sus_scrofa_hampshire	ENSSSCP00035035968	90.1442	89.1827	sus_scrofa_pietrain	ENSSSCP00055010999	94.2211	93.2161

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression