RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035062486	Gene ID	100511875	Accession	-
Symbol	EXOSC4	Alias	-	Full Name	exosome component 4
Status	Confidence	Length	2372 bases	Strand	Minus strand
Position	LUXS01045075.1 : 581769 - 584140	RNA binding domain	RNase_PH , RNase_PH_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035034894	RNase_PH	PF01138	4e-32	1
ENSSSCP00035034894	RNase_PH_C	PF03725	2.3e-08	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EXOSC4-201	ENSSSCT00035083960	1287	245aa	ENSSSCP00035034894

Gene Model

Click here to download ENSSSCG00035062486's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035062486's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035005205	41.9118	27.9412	sus_scrofa_hampshire	ENSSSCP00035034894	46.5306	31.0204
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035022216	41.2556	25.5605	sus_scrofa_hampshire	ENSSSCP00035034894	37.551	23.2653

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa	ENSSSCP00000006334	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_berkshire	ENSSSCP00065006324	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	97.9592	96.3265	equus_caballus	ENSECAP00000011336	97.9592	96.3265
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	98.3673	96.7347	bos_taurus	ENSBTAP00000019451	98.3673	96.7347
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_usmarc	ENSSSCP00070031651	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	81.2245	78.7755	sus_scrofa_wuzhishan	ENSSSCP00005031424	88.4444	85.7778
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_rongchang	ENSSSCP00030002532	91.0781	91.0781
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_jinhua	ENSSSCP00060012013	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_tibetan	ENSSSCP00015016729	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	97.9592	96.3265	ovis_aries_rambouillet	ENSOARP00020007043	97.9592	96.3265
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_bamei	ENSSSCP00050035478	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_meishan	ENSSSCP00040032153	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_largewhite	ENSSSCP00025038312	91.7603	91.7603
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_landrace	ENSSSCP00045007868	100	100
ENSSSCG00035062486	sus_scrofa_hampshire	ENSSSCP00035034894	100	100	sus_scrofa_pietrain	ENSSSCP00055045702	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression