Description

Ensembl ID ENSSSCG00035061188 Gene ID 100154484 Accession -
Symbol RCL1 Alias - Full Name RNA terminal phosphate cyclase like 1
Status Confidence Length 61966 bases Strand Plus strand
Position LUXS01057166.1 : 132492 - 194457 RNA binding domain RTC_insert , RTC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00035034072 RTC_insert PF05189 7e-37 1
ENSSSCP00035034072 RTC PF01137 4e-12 2
ENSSSCP00035034062 RTC_insert PF05189 2.7e-36 1
ENSSSCP00035034062 RTC PF01137 4.3e-62 2
ENSSSCP00035034083 RTC_insert PF05189 2.8e-29 1
ENSSSCP00035034083 RTC PF01137 2.2e-07 2
ENSSSCP00035034068 RTC PF01137 1.7e-35 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RCL1-202 ENSSSCT00035082185 2015 450aa ENSSSCP00035034062
RCL1-201 ENSSSCT00035082194 772 175aa ENSSSCP00035034068
RCL1-203 ENSSSCT00035082201 4798 215aa ENSSSCP00035034072
RCL1-204 ENSSSCT00035082214 1332 187aa ENSSSCP00035034083

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003500480346.721327.3224sus_scrofa_hampshireENSSSCP000350340623822.2222

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406240.444440.2222sus_scrofaENSSSCP0000007126997.326296.7914
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_berkshireENSSSCP00065029214100100
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406281.777881.1111equus_caballusENSECAP0000001375797.354596.5608
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_usmarcENSSSCP00070050226100100
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406282.666782.6667sus_scrofa_wuzhishanENSSSCP0000502975399.731999.7319
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406299.777899.7778sus_scrofa_rongchangENSSSCP0003003355599.777899.7778
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406299.777899.7778sus_scrofa_jinhuaENSSSCP0006003394699.777899.7778
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406299.777899.7778sus_scrofa_tibetanENSSSCP0001503541099.777899.7778
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP000350340628280ovis_aries_rambouilletENSOARP0002000954098.927696.5147
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_bameiENSSSCP00050004914100100
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP0003503406299.777899.7778sus_scrofa_meishanENSSSCP0004000693699.777899.7778
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_largewhiteENSSSCP00025022208100100
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_landraceENSSSCP00045022236100100
ENSSSCG00035061188sus_scrofa_hampshireENSSSCP00035034062100100sus_scrofa_pietrainENSSSCP00055024095100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression