RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035057120	Gene ID		Accession	-
Symbol	NIP7	Alias	-	Full Name	60S ribosome subunit biogenesis protein NIP7 homolog
Status	Confidence	Length	13310 bases	Strand	Minus strand
Position	LUXS01073103.1 : 1595928 - 1609237	RNA binding domain	UPF0113 , UPF0113_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035031216	UPF0113	PF03657	4.3e-22	1
ENSSSCP00035031216	UPF0113_N	PF17833	4.8e-34	2
ENSSSCP00035031209	UPF0113	PF03657	4.8e-11	1
ENSSSCP00035031209	UPF0113_N	PF17833	4.2e-34	2
ENSSSCP00035031219	UPF0113_N	PF17833	2.5e-34	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NIP7-201	ENSSSCT00035076388	716	192aa	ENSSSCP00035031209
NIP7-202	ENSSSCT00035076402	6783	180aa	ENSSSCP00035031216
NIP7-203	ENSSSCT00035076406	841	133aa	ENSSSCP00035031219

Gene Model

Click here to download ENSSSCG00035057120's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035057120's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035006366	22.2222	10.2564	sus_scrofa_hampshire	ENSSSCP00035031209	13.5417	6.25
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035034389	30.3797	16.4557	sus_scrofa_hampshire	ENSSSCP00035031209	12.5	6.77083

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa	ENSSSCP00000061779	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	100	100	sus_scrofa_berkshire	ENSSSCP00065030112	100	100
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	75.5208	equus_caballus	ENSECAP00000026471	81.7204	77.957
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	75.5208	bos_taurus	ENSBTAP00000002182	84.4444	80.5556
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa_usmarc	ENSSSCP00070000852	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa_wuzhishan	ENSSSCP00005015307	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa_rongchang	ENSSSCP00030040174	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	100	100	sus_scrofa_jinhua	ENSSSCP00060007609	100	100
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	78.6458	75	ovis_aries_rambouillet	ENSOARP00020011748	83.8889	80
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	55.2083	48.4375	ovis_aries_rambouillet	ENSOARP00020016238	50	43.8679
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa_bamei	ENSSSCP00050005062	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	100	100	sus_scrofa_meishan	ENSSSCP00040008971	100	100
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	79.1667	76.5625	sus_scrofa_largewhite	ENSSSCP00025029718	84.4444	81.6667
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	100	100	sus_scrofa_landrace	ENSSSCP00045032921	100	100
ENSSSCG00035057120	sus_scrofa_hampshire	ENSSSCP00035031209	100	100	sus_scrofa_pietrain	ENSSSCP00055006339	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression