RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035056199	Gene ID		Accession	-
Symbol	RPL10L	Alias	-	Full Name	NA
Status	Confidence	Length	645 bases	Strand	Minus strand
Position	LUXS01077749.1 : 707104 - 707748	RNA binding domain	Ribosomal_L16
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035030485	Ribosomal_L16	PF00252	5.4e-37	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL10L-201	ENSSSCT00035075015	645	214aa	ENSSSCP00035030485

Gene Model

Click here to download ENSSSCG00035056199's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035056199's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035026685	63.8298	62.31	sus_scrofa_hampshire	ENSSSCP00035030485	98.1308	95.7944
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035043968	72.549	64.7059	sus_scrofa_hampshire	ENSSSCP00035030485	34.5794	30.8411
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035046322	45.4545	38.6364	sus_scrofa_hampshire	ENSSSCP00035030485	28.0374	23.8318
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035026013	66	63	sus_scrofa_hampshire	ENSSSCP00035030485	30.8411	29.4393
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035027567	65.8824	58.2353	sus_scrofa_hampshire	ENSSSCP00035030485	52.3364	46.2617

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	82.243	82.243	sus_scrofa	ENSSSCP00000005379	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_berkshire	ENSSSCP00065013960	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	96.2617	89.7196	equus_caballus	ENSECAP00000048862	94.9309	88.4793
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	98.5981	97.6636	bos_taurus	ENSBTAP00000007086	98.5981	97.6636
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_usmarc	ENSSSCP00070002511	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_wuzhishan	ENSSSCP00005022999	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_rongchang	ENSSSCP00030045397	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_jinhua	ENSSSCP00060016932	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_tibetan	ENSSSCP00015028900	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	98.5981	97.6636	ovis_aries_rambouillet	ENSOARP00020025372	98.5981	97.6636
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_bamei	ENSSSCP00050025265	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_meishan	ENSSSCP00040031650	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_largewhite	ENSSSCP00025006726	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_landrace	ENSSSCP00045033287	100	100
ENSSSCG00035056199	sus_scrofa_hampshire	ENSSSCP00035030485	100	100	sus_scrofa_pietrain	ENSSSCP00055044604	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression