RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035049337	Gene ID		Accession	-
Symbol	RPL10	Alias	-	Full Name	60S ribosomal protein L10
Status	Confidence	Length	3316 bases	Strand	Minus strand
Position	LUXS01028289.1 : 128376 - 131691	RNA binding domain	Ribosomal_L16
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035026695	Ribosomal_L16	PF00252	5.3e-37	1
ENSSSCP00035026703	Ribosomal_L16	PF00252	7.1e-37	1
ENSSSCP00035026689	Ribosomal_L16	PF00252	1.1e-36	1
ENSSSCP00035026685	Ribosomal_L16	PF00252	1.6e-36	1
ENSSSCP00035026699	Ribosomal_L16	PF00252	7.6e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL10-201	ENSSSCT00035065783	1227	329aa	ENSSSCP00035026685
RPL10-202	ENSSSCT00035065791	931	282aa	ENSSSCP00035026689
RPL10-203	ENSSSCT00035065804	907	214aa	ENSSSCP00035026695
RPL10-204	ENSSSCT00035065814	799	178aa	ENSSSCP00035026699
RPL10-205	ENSSSCT00035065819	791	236aa	ENSSSCP00035026703

Gene Model

Click here to download ENSSSCG00035049337's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035049337's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035030485	98.1308	95.7944	sus_scrofa_hampshire	ENSSSCP00035026685	63.8298	62.31
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035043968	74.5098	67.6471	sus_scrofa_hampshire	ENSSSCP00035026685	23.1003	20.9726
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035046322	46.9697	40.9091	sus_scrofa_hampshire	ENSSSCP00035026685	18.845	16.4134
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026013	69	64	sus_scrofa_hampshire	ENSSSCP00035026685	20.9726	19.4529
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035027567	70.5882	64.1176	sus_scrofa_hampshire	ENSSSCP00035026685	36.4742	33.1307

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa	ENSSSCP00000035267	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_berkshire	ENSSSCP00065006118	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_usmarc	ENSSSCP00070010475	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_wuzhishan	ENSSSCP00005007371	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_rongchang	ENSSSCP00030008024	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_jinhua	ENSSSCP00060020882	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_tibetan	ENSSSCP00015011597	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	99.696	99.696	sus_scrofa_bamei	ENSSSCP00050045254	99.696	99.696
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	100	100	sus_scrofa_meishan	ENSSSCP00040032178	100	100
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	99.696	99.696	sus_scrofa_largewhite	ENSSSCP00025000015	99.696	99.696
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	99.696	99.696	sus_scrofa_landrace	ENSSSCP00045000776	99.696	99.696
ENSSSCG00035049337	sus_scrofa_hampshire	ENSSSCP00035026685	99.696	99.696	sus_scrofa_pietrain	ENSSSCP00055007967	99.696	99.696

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression