RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035045537	Gene ID	100737651	Accession	-
Symbol	MRPL27	Alias	-	Full Name	mitochondrial ribosomal protein L27
Status	Confidence	Length	6559 bases	Strand	Minus strand
Position	LUXS01062703.1 : 65539 - 72097	RNA binding domain	Ribosomal_L27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035024365	Ribosomal_L27	PF01016	5.2e-26	1
ENSSSCP00035024358	Ribosomal_L27	PF01016	5.4e-26	1
ENSSSCP00035024362	Ribosomal_L27	PF01016	6e-26	1
ENSSSCP00035024367	Ribosomal_L27	PF01016	6.5e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPL27-201	ENSSSCT00035060529	1438	146aa	ENSSSCP00035024355
MRPL27-203	ENSSSCT00035060539	690	152aa	ENSSSCP00035024358
MRPL27-202	ENSSSCT00035060547	711	159aa	ENSSSCP00035024362
MRPL27-204	ENSSSCT00035060563	703	148aa	ENSSSCP00035024365
MRPL27-205	ENSSSCT00035060565	324	95aa	ENSSSCP00035024367

Gene Model

Click here to download ENSSSCG00035045537's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035045537's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035045537

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	55.9748	50.3145	sus_scrofa	ENSSSCP00000062056	60.9589	54.7945
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	87.4214	86.7924	sus_scrofa_berkshire	ENSSSCP00065040911	91.4474	90.7895
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	83.6478	80.5031	equus_caballus	ENSECAP00000065969	58.3333	56.1404
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	86.7924	84.9057	bos_taurus	ENSBTAP00000028954	93.2432	91.2162
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	86.1635	85.5346	sus_scrofa_usmarc	ENSSSCP00070021269	83.0303	82.4242
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	86.7924	86.7924	sus_scrofa_wuzhishan	ENSSSCP00005015715	93.2432	93.2432
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	100	100	sus_scrofa_rongchang	ENSSSCP00030027659	100	100
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	87.4214	86.7924	sus_scrofa_jinhua	ENSSSCP00060038608	91.4474	90.7895
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	87.4214	86.7924	sus_scrofa_tibetan	ENSSSCP00015036580	91.4474	90.7895
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	85.5346	83.6478	ovis_aries_rambouillet	ENSOARP00020016519	91.8919	89.8649
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	87.4214	86.7924	sus_scrofa_bamei	ENSSSCP00050043859	91.4474	90.7895
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	100	100	sus_scrofa_meishan	ENSSSCP00040014308	100	100
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	100	100	sus_scrofa_largewhite	ENSSSCP00025018192	100	100
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	100	100	sus_scrofa_landrace	ENSSSCP00045007033	100	100
ENSSSCG00035045537	sus_scrofa_hampshire	ENSSSCP00035024362	100	100	sus_scrofa_pietrain	ENSSSCP00055004667	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression