RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035041581	Gene ID		Accession	-
Symbol	EXOSC5	Alias	-	Full Name	NA
Status	Confidence	Length	8355 bases	Strand	Minus strand
Position	LUXS01025774.1 : 226820 - 235174	RNA binding domain	RNase_PH , RNase_PH_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035022219	RNase_PH	PF01138	5.9e-23	1
ENSSSCP00035022216	RNase_PH	PF01138	6e-23	1
ENSSSCP00035022216	RNase_PH_C	PF03725	3.8e-06	2
ENSSSCP00035022214	RNase_PH	PF01138	8.9e-13	1
ENSSSCP00035022214	RNase_PH_C	PF03725	6.9e-09	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EXOSC5-201	ENSSSCT00035055238	964	197aa	ENSSSCP00035022214
EXOSC5-203	ENSSSCT00035055241	1400	223aa	ENSSSCP00035022216
EXOSC5-202	ENSSSCT00035055246	2392	209aa	ENSSSCP00035022219

Gene Model

Click here to download ENSSSCG00035041581's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035041581's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035034894	37.551	23.2653	sus_scrofa_hampshire	ENSSSCP00035022216	41.2556	25.5605
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035005205	33.4559	22.7941	sus_scrofa_hampshire	ENSSSCP00035022216	40.8072	27.8027

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	93.2735	92.3767	sus_scrofa	ENSSSCP00000003265	69.5652	68.8963
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	100	100	sus_scrofa_berkshire	ENSSSCP00065009337	100	100
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	88.7892	84.7534	equus_caballus	ENSECAP00000059740	75.2852	71.8631
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	88.3408	84.7534	bos_taurus	ENSBTAP00000021338	83.8298	80.4255
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	93.2735	92.3767	sus_scrofa_usmarc	ENSSSCP00070002890	88.5106	87.6596
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	100	100	sus_scrofa_wuzhishan	ENSSSCP00005020998	77.7003	77.7003
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	99.5516	99.5516	sus_scrofa_rongchang	ENSSSCP00030013095	99.5516	99.5516
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	68.6099	63.6771	sus_scrofa_jinhua	ENSSSCP00060042458	68.6099	63.6771
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	68.6099	63.6771	sus_scrofa_tibetan	ENSSSCP00015046932	68.6099	63.6771
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	88.7892	84.7534	ovis_aries_rambouillet	ENSOARP00020023080	84.2553	80.4255
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	99.5516	99.5516	sus_scrofa_bamei	ENSSSCP00050012793	99.5516	99.5516
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	68.6099	63.6771	sus_scrofa_meishan	ENSSSCP00040042552	68.6099	63.6771
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	100	100	sus_scrofa_largewhite	ENSSSCP00025011515	100	100
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	100	100	sus_scrofa_landrace	ENSSSCP00045039833	100	100
ENSSSCG00035041581	sus_scrofa_hampshire	ENSSSCP00035022216	99.5516	99.5516	sus_scrofa_pietrain	ENSSSCP00055013752	99.5516	99.5516

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression