RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035039353	Gene ID		Accession	-
Symbol	TPM2	Alias	-	Full Name	NA
Status	Confidence	Length	8661 bases	Strand	Minus strand
Position	LUXS01027403.1 : 694247 - 702907	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035021033	Tropomyosin	PF00261	1.1e-91	1
ENSSSCP00035021019	Tropomyosin	PF00261	6.1e-90	1
ENSSSCP00035021023	Tropomyosin	PF00261	4.5e-85	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TPM2-202	ENSSSCT00035052281	1786	284aa	ENSSSCP00035021019
TPM2-201	ENSSSCT00035052292	1895	280aa	ENSSSCP00035021023
TPM2-203	ENSSSCT00035052306	2216	359aa	ENSSSCP00035021033

Gene Model

Click here to download ENSSSCG00035039353's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035039353's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035020881	89.0845	77.4648	sus_scrofa_hampshire	ENSSSCP00035021033	70.4735	61.2813
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035006664	65.2174	48.913	sus_scrofa_hampshire	ENSSSCP00035021033	16.7131	12.5348
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035048750	94.3662	83.0986	sus_scrofa_hampshire	ENSSSCP00035021033	74.6518	65.7382
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035040065	64.4385	52.139	sus_scrofa_hampshire	ENSSSCP00035021033	67.1309	54.3175

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.8217	sus_scrofa	ENSSSCP00000045307	97.2145	95.8217
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.8217	sus_scrofa_berkshire	ENSSSCP00065029925	97.2145	95.8217
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	77.7159	75.2089	equus_caballus	ENSECAP00000028458	90.2913	87.3786
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	79.1086	79.1086	bos_taurus	ENSBTAP00000043502	100	100
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.8217	sus_scrofa_usmarc	ENSSSCP00070046257	97.2145	95.8217
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	75.4875	73.2591	sus_scrofa_wuzhishan	ENSSSCP00005047056	95.4225	92.6056
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.5432	sus_scrofa_rongchang	ENSSSCP00030031378	97.2145	95.5432
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.5432	sus_scrofa_jinhua	ENSSSCP00060011824	97.2145	95.5432
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	76.3231	74.9304	sus_scrofa_tibetan	ENSSSCP00015003643	96.4789	94.7183
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	76.3231	74.9304	ovis_aries_rambouillet	ENSOARP00020007247	96.4789	94.7183
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	100	99.7215	sus_scrofa_bamei	ENSSSCP00050002518	100	99.7215
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	79.1086	79.1086	sus_scrofa_meishan	ENSSSCP00040007653	100	100
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	79.1086	79.1086	sus_scrofa_largewhite	ENSSSCP00025030664	100	100
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.8217	sus_scrofa_landrace	ENSSSCP00045017220	97.2145	95.8217
ENSSSCG00035039353	sus_scrofa_hampshire	ENSSSCP00035021033	97.2145	95.5432	sus_scrofa_pietrain	ENSSSCP00055018901	97.2145	95.5432

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression