| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00035039121 | Gene ID |
397608 |
Accession |
- |
| Symbol |
TPM4 |
Alias |
- |
Full Name |
tropomyosin 4 |
| Status |
Confidence |
Length |
23062 bases |
Strand |
Minus strand |
| Position |
LUXS01039718.1 : 1055404 - 1078465 |
RNA binding domain |
Tropomyosin |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00035020901 |
Tropomyosin |
PF00261 |
2.8e-94 |
1 |
| ENSSSCP00035020889 |
Tropomyosin |
PF00261 |
9.3e-93 |
1 |
| ENSSSCP00035020881 |
Tropomyosin |
PF00261 |
4.6e-92 |
1 |
| ENSSSCP00035020865 |
Tropomyosin |
PF00261 |
2.8e-80 |
1 |
| ENSSSCP00035020914 |
Tropomyosin |
PF00261 |
4e-77 |
1 |
| ENSSSCP00035020914 |
Tropomyosin |
PF00261 |
4e-77 |
2 |
| ENSSSCP00035020904 |
Tropomyosin |
PF00261 |
6.6e-74 |
1 |
| ENSSSCP00035020869 |
Tropomyosin |
PF00261 |
2.7e-44 |
1 |
| ENSSSCP00035020869 |
Tropomyosin |
PF00261 |
2.7e-44 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| TPM4-202 |
ENSSSCT00035051959 |
2168 |
231aa |
ENSSSCP00035020865 |
| TPM4-201 |
ENSSSCT00035051963 |
1897 |
155aa |
ENSSSCP00035020869 |
| TPM4-204 |
ENSSSCT00035051992 |
2279 |
284aa |
ENSSSCP00035020881 |
| TPM4-203 |
ENSSSCT00035052009 |
2085 |
248aa |
ENSSSCP00035020889 |
| TPM4-206 |
ENSSSCT00035052026 |
1046 |
284aa |
ENSSSCP00035020901 |
| TPM4-207 |
ENSSSCT00035052029 |
1007 |
271aa |
ENSSSCP00035020904 |
| TPM4-205 |
ENSSSCT00035052041 |
980 |
233aa |
ENSSSCP00035020914 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035021033 | 70.4735 | 61.2813 | sus_scrofa_hampshire | ENSSSCP00035020881 | 89.0845 | 77.4648 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035006664 | 68.4783 | 53.2609 | sus_scrofa_hampshire | ENSSSCP00035020881 | 22.1831 | 17.2535 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035048750 | 91.9014 | 80.6338 | sus_scrofa_hampshire | ENSSSCP00035020881 | 91.9014 | 80.6338 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035040065 | 63.9037 | 55.0802 | sus_scrofa_hampshire | ENSSSCP00035020881 | 84.1549 | 72.5352 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 100 | 100 | sus_scrofa | ENSSSCP00000040331 | 100 | 100 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_berkshire | ENSSSCP00065000529 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 76.7606 | 69.7183 | equus_caballus | ENSECAP00000019820 | 84.4961 | 76.7442 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 92.6056 | 90.493 | bos_taurus | ENSBTAP00000070321 | 92.6056 | 90.493 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_usmarc | ENSSSCP00070034635 | 95.4225 | 92.9577 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_wuzhishan | ENSSSCP00005029513 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 100 | 99.6479 | sus_scrofa_rongchang | ENSSSCP00030030211 | 100 | 99.6479 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_jinhua | ENSSSCP00060014875 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_tibetan | ENSSSCP00015029817 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 100 | 99.6479 | ovis_aries_rambouillet | ENSOARP00020023756 | 100 | 99.6479 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_bamei | ENSSSCP00050043240 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 100 | 100 | sus_scrofa_meishan | ENSSSCP00040043134 | 100 | 100 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_largewhite | ENSSSCP00025005020 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_landrace | ENSSSCP00045036871 | 84.6875 | 82.5 |
| ENSSSCG00035039121 | sus_scrofa_hampshire | ENSSSCP00035020881 | 95.4225 | 92.9577 | sus_scrofa_pietrain | ENSSSCP00055039574 | 95.4225 | 92.9577 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
