RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035035455	Gene ID	100511347	Accession	-
Symbol	EXOSC7	Alias	-	Full Name	exosome component 7
Status	Confidence	Length	32264 bases	Strand	Minus strand
Position	LUXS01003945.1 : 7605 - 39868	RNA binding domain	RNase_PH , RNase_PH_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035018786	RNase_PH	PF01138	6.2e-24	1
ENSSSCP00035018786	RNase_PH_C	PF03725	4.6e-13	2
ENSSSCP00035018796	RNase_PH	PF01138	1.7e-23	1
ENSSSCP00035018796	RNase_PH_C	PF03725	1.5e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EXOSC7-201	ENSSSCT00035046983	3184	291aa	ENSSSCP00035018786
EXOSC7-202	ENSSSCT00035046999	4759	349aa	ENSSSCP00035018796

Gene Model

Click here to download ENSSSCG00035035455's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035035455's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035020990	34.3164	19.8391	sus_scrofa_hampshire	ENSSSCP00035018796	36.6762	21.2034
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035008443	34.5154	21.7494	sus_scrofa_hampshire	ENSSSCP00035018796	41.8338	26.361

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	96.2751	95.4155	sus_scrofa	ENSSSCP00000077352	96	95.1429
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	74.4986	71.9198	sus_scrofa_berkshire	ENSSSCP00065004759	89.0411	85.9589
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.2235	74.212	equus_caballus	ENSECAP00000047958	86.6667	82.2222
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.2235	73.9255	bos_taurus	ENSBTAP00000024390	93.8144	88.6598
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	77.0774	75.0716	sus_scrofa_usmarc	ENSSSCP00070013816	92.7586	90.3448
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	74.4986	71.9198	sus_scrofa_wuzhishan	ENSSSCP00005041449	89.0411	85.9589
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	75.9312	74.212	sus_scrofa_rongchang	ENSSSCP00030044707	93.6396	91.5194
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.2235	76.5043	sus_scrofa_jinhua	ENSSSCP00060008127	93.8144	91.7526
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	75.9312	74.212	sus_scrofa_tibetan	ENSSSCP00015023404	93.6396	91.5194
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	77.937	73.3524	ovis_aries_rambouillet	ENSOARP00020033066	56.3147	53.0021
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.51	76.7908	sus_scrofa_bamei	ENSSSCP00050038007	94.1581	92.0962
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	75.9312	74.212	sus_scrofa_meishan	ENSSSCP00040025725	93.6396	91.5194
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.51	76.7908	sus_scrofa_largewhite	ENSSSCP00025025451	94.1581	92.0962
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.2235	76.5043	sus_scrofa_landrace	ENSSSCP00045027236	93.8144	91.7526
ENSSSCG00035035455	sus_scrofa_hampshire	ENSSSCP00035018796	78.51	76.7908	sus_scrofa_pietrain	ENSSSCP00055021847	94.1581	92.0962

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression