RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035033645	Gene ID		Accession	-
Symbol	CARS	Alias	-	Full Name	NA
Status	Confidence	Length	43729 bases	Strand	Plus strand
Position	LUXS01013925.1 : 216585 - 260313	RNA binding domain	tRNA-synt_1e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035017870	tRNA-synt_1e	PF01406	3e-125	1
ENSSSCP00035017863	tRNA-synt_1e	PF01406	3.8e-125	1
ENSSSCP00035017874	tRNA-synt_1e	PF01406	3.8e-125	1
ENSSSCP00035017867	tRNA-synt_1e	PF01406	4e-125	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CARS-201	ENSSSCT00035044645	4476	751aa	ENSSSCP00035017863
CARS-202	ENSSSCT00035044653	4193	831aa	ENSSSCP00035017867
CARS-203	ENSSSCT00035044660	3187	748aa	ENSSSCP00035017870
CARS-204	ENSSSCT00035044668	4397	751aa	ENSSSCP00035017874

Gene Model

Click here to download ENSSSCG00035033645's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035033645's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035010155	41.6787	28.9436	sus_scrofa_hampshire	ENSSSCP00035017867	34.657	24.0674

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	92.9001	91.4561	sus_scrofa	ENSSSCP00000060414	89.6632	88.2695
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.1901	80.3851	sus_scrofa_berkshire	ENSSSCP00065041588	76.4838	74.804
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	83.2732	77.858	equus_caballus	ENSECAP00000004803	83.3735	77.9518
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	83.1528	78.7004	bos_taurus	ENSBTAP00000014273	83.0529	78.6058
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	9.26594	8.54392	sus_scrofa_usmarc	ENSSSCP00070015210	79.3814	73.1959
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	23.3454	16.3658	sus_scrofa_wuzhishan	ENSSSCP00005012246	56.8915	39.8827
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	79.1817	75.5716	sus_scrofa_rongchang	ENSSSCP00030046131	70.5252	67.3098
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.3105	80.5054	sus_scrofa_jinhua	ENSSSCP00060023796	77.7273	76.0227
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	99.8797	99.7593	sus_scrofa_tibetan	ENSSSCP00015001003	99.8797	99.7593
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	76.6546	71.7208	ovis_aries_rambouillet	ENSOARP00020027049	76.0143	71.1217
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.3105	80.5054	sus_scrofa_bamei	ENSSSCP00050006633	76.5957	74.916
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.0698	79.0614	sus_scrofa_meishan	ENSSSCP00040010563	91.0547	87.717
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.1901	80.3851	sus_scrofa_largewhite	ENSSSCP00025016474	76.4838	74.804
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.1901	80.3851	sus_scrofa_landrace	ENSSSCP00045006722	76.4838	74.804
ENSSSCG00035033645	sus_scrofa_hampshire	ENSSSCP00035017867	82.1901	80.3851	sus_scrofa_pietrain	ENSSSCP00055019106	76.4838	74.804

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression