RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035029237	Gene ID		Accession	-
Symbol	AGO3	Alias	-	Full Name	NA
Status	Confidence	Length	133814 bases	Strand	Plus strand
Position	LUXS01040092.1 : 1522575 - 1656388	RNA binding domain	Piwi , PAZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035015533	Piwi	PF02171	1.1e-113	1
ENSSSCP00035015533	PAZ	PF02170	9e-29	2
ENSSSCP00035015521	Piwi	PF02171	1.9e-113	1
ENSSSCP00035015521	PAZ	PF02170	1.2e-28	2
ENSSSCP00035015513	Piwi	PF02171	2e-113	1
ENSSSCP00035015513	PAZ	PF02170	1.2e-28	2
ENSSSCP00035015497	Piwi	PF02171	2e-113	1
ENSSSCP00035015497	PAZ	PF02170	1.1e-28	2
ENSSSCP00035015523	Piwi	PF02171	2e-113	1
ENSSSCP00035015523	PAZ	PF02170	1.3e-28	2
ENSSSCP00035015481	Piwi	PF02171	2e-113	1
ENSSSCP00035015481	PAZ	PF02170	1.2e-28	2
ENSSSCP00035015526	Piwi	PF02171	2e-113	1
ENSSSCP00035015526	PAZ	PF02170	1.3e-28	2
ENSSSCP00035015531	Piwi	PF02171	2.1e-113	1
ENSSSCP00035015531	PAZ	PF02170	1.3e-28	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AGO3-201	ENSSSCT00035038768	5918	860aa	ENSSSCP00035015481
AGO3-202	ENSSSCT00035038803	5595	858aa	ENSSSCP00035015497
AGO3-203	ENSSSCT00035038837	5592	857aa	ENSSSCP00035015513
AGO3-204	ENSSSCT00035038847	5574	851aa	ENSSSCP00035015521
AGO3-205	ENSSSCT00035038854	5595	858aa	ENSSSCP00035015523
AGO3-206	ENSSSCT00035038858	5622	867aa	ENSSSCP00035015526
AGO3-207	ENSSSCT00035038865	5676	885aa	ENSSSCP00035015531
AGO3-208	ENSSSCT00035038874	5070	683aa	ENSSSCP00035015533

Gene Model

Click here to download ENSSSCG00035029237's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035029237's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035011484	87.4715	79.8405	sus_scrofa_hampshire	ENSSSCP00035015531	86.7797	79.209
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035044904	86.5672	77.8416	sus_scrofa_hampshire	ENSSSCP00035015531	85.1977	76.6102
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035014529	89.6552	82.8736	sus_scrofa_hampshire	ENSSSCP00035015531	88.1356	81.4689

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	97.7401	97.2881	sus_scrofa	ENSSSCP00000003936	63.37	63.0769
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	100	100	sus_scrofa_berkshire	ENSSSCP00065003741	100	100
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	97.4011	97.1751	equus_caballus	ENSECAP00000077586	99.1945	98.9643
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	96.6102	96.6102	bos_taurus	ENSBTAP00000063841	99.4186	99.4186
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	100	100	sus_scrofa_wuzhishan	ENSSSCP00005019907	100	100
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	100	100	sus_scrofa_rongchang	ENSSSCP00030023008	100	100
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	27.3446	27.3446	sus_scrofa_jinhua	ENSSSCP00060037370	100	100
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	100	100	sus_scrofa_tibetan	ENSSSCP00015012528	100	100
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	96.6102	96.6102	ovis_aries_rambouillet	ENSOARP00020016180	99.4186	99.4186
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	78.8701	75.4802	sus_scrofa_meishan	ENSSSCP00040039505	74.4931	71.2914
ENSSSCG00035029237	sus_scrofa_hampshire	ENSSSCP00035015531	100	100	sus_scrofa_largewhite	ENSSSCP00025020296	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression