RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035024696	Gene ID		Accession	-
Symbol	NOC3L	Alias	-	Full Name	Sus scrofa NOC3 like DNA replication regulator (NOC3L), mRNA.
Status	Confidence	Length	57509 bases	Strand	Plus strand
Position	LUXS01036463.1 : 300821 - 358329	RNA binding domain	NOC3p , CBF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035012797	NOC3p	PF07540	4e-29	1
ENSSSCP00035012797	CBF	PF03914	1.8e-29	2
ENSSSCP00035012792	NOC3p	PF07540	4.3e-29	1
ENSSSCP00035012792	CBF	PF03914	1.9e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NOC3L-201	ENSSSCT00035032491	2687	799aa	ENSSSCP00035012792
NOC3L-202	ENSSSCT00035032500	3202	762aa	ENSSSCP00035012797

Gene Model

Click here to download ENSSSCG00035024696's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035024696's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035024696

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa	ENSSSCP00000024314	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_berkshire	ENSSSCP00065046038	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	97.622	95.2441	equus_caballus	ENSECAP00000088462	93.75	91.4663
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	98.1227	95.8698	bos_taurus	ENSBTAP00000068094	98.1227	95.8698
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_usmarc	ENSSSCP00070031628	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_wuzhishan	ENSSSCP00005018014	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_rongchang	ENSSSCP00030031091	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	99.7497	99.7497	sus_scrofa_jinhua	ENSSSCP00060017644	99.7497	99.7497
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	65.4568	65.4568	sus_scrofa_tibetan	ENSSSCP00015028145	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	97.4969	95.2441	ovis_aries_rambouillet	ENSOARP00020023283	97.4969	95.2441
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_bamei	ENSSSCP00050046301	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_meishan	ENSSSCP00040008665	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_largewhite	ENSSSCP00025000581	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_landrace	ENSSSCP00045003251	100	100
ENSSSCG00035024696	sus_scrofa_hampshire	ENSSSCP00035012792	100	100	sus_scrofa_pietrain	ENSSSCP00055046968	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression