RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00035023960	Gene ID		Accession	-
Symbol	DICER1	Alias	-	Full Name	NA
Status	Confidence	Length	74811 bases	Strand	Minus strand
Position	LUXS01048527.1 : 391017 - 465827	RNA binding domain	ResIII , DEAD , Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035012386	ResIII	PF04851	6.6e-12	1
ENSSSCP00035012386	DEAD	PF00270	4.4e-12	2
ENSSSCP00035012386	Ribonucleas_3_3	PF14622	5.6e-19	3
ENSSSCP00035012386	PAZ	PF02170	1.6e-35	4
ENSSSCP00035012386	Dicer_dimer	PF03368	1.9e-24	5
ENSSSCP00035012386	Ribonuclease_3	PF00636	5.8e-62	6
ENSSSCP00035012386	Ribonuclease_3	PF00636	5.8e-62	7
ENSSSCP00035012394	ResIII	PF04851	6.8e-12	1
ENSSSCP00035012394	DEAD	PF00270	4.6e-12	2
ENSSSCP00035012394	Ribonucleas_3_3	PF14622	4.3e-24	3
ENSSSCP00035012394	PAZ	PF02170	1.6e-35	4
ENSSSCP00035012394	Dicer_dimer	PF03368	2e-24	5
ENSSSCP00035012394	Ribonuclease_3	PF00636	1.1e-69	6
ENSSSCP00035012394	Ribonuclease_3	PF00636	1.1e-69	7
ENSSSCP00035012370	ResIII	PF04851	6.8e-12	1
ENSSSCP00035012370	DEAD	PF00270	4.6e-12	2
ENSSSCP00035012370	Ribonucleas_3_3	PF14622	5.1e-21	3
ENSSSCP00035012370	PAZ	PF02170	1.6e-35	4
ENSSSCP00035012370	Dicer_dimer	PF03368	1.6e-24	5
ENSSSCP00035012370	Ribonuclease_3	PF00636	1.1e-52	6
ENSSSCP00035012370	Ribonuclease_3	PF00636	1.1e-52	7
ENSSSCP00035012347	ResIII	PF04851	7.1e-12	1
ENSSSCP00035012347	DEAD	PF00270	4.8e-12	2
ENSSSCP00035012347	Ribonucleas_3_3	PF14622	4.8e-24	3
ENSSSCP00035012347	PAZ	PF02170	1.7e-35	4
ENSSSCP00035012347	Dicer_dimer	PF03368	1.7e-24	5
ENSSSCP00035012347	Ribonuclease_3	PF00636	1.2e-69	6
ENSSSCP00035012347	Ribonuclease_3	PF00636	1.2e-69	7
ENSSSCP00035012336	ResIII	PF04851	7.1e-12	1
ENSSSCP00035012336	DEAD	PF00270	4.8e-12	2
ENSSSCP00035012336	Ribonucleas_3_3	PF14622	4.8e-24	3
ENSSSCP00035012336	PAZ	PF02170	1.7e-35	4
ENSSSCP00035012336	Dicer_dimer	PF03368	1.7e-24	5
ENSSSCP00035012336	Ribonuclease_3	PF00636	1.2e-69	6
ENSSSCP00035012336	Ribonuclease_3	PF00636	1.2e-69	7
ENSSSCP00035012319	ResIII	PF04851	7.2e-12	1
ENSSSCP00035012319	DEAD	PF00270	4.9e-12	2
ENSSSCP00035012319	Ribonucleas_3_3	PF14622	5e-24	3
ENSSSCP00035012319	PAZ	PF02170	1.8e-35	4
ENSSSCP00035012319	Dicer_dimer	PF03368	2.1e-24	5
ENSSSCP00035012319	Ribonuclease_3	PF00636	1.2e-69	6
ENSSSCP00035012319	Ribonuclease_3	PF00636	1.2e-69	7

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DICER1-201	ENSSSCT00035031449	7417	1936aa	ENSSSCP00035012319
DICER1-202	ENSSSCT00035031487	7547	1919aa	ENSSSCP00035012336
DICER1-203	ENSSSCT00035031522	6905	1914aa	ENSSSCP00035012347
DICER1-204	ENSSSCT00035031568	6749	1862aa	ENSSSCP00035012370
DICER1-205	ENSSSCT00035031608	6742	1822aa	ENSSSCP00035012386
DICER1-206	ENSSSCT00035031619	6474	1860aa	ENSSSCP00035012394

Gene Model

Click here to download ENSSSCG00035023960's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035023960's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035023960

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.8492	96.3843	sus_scrofa	ENSSSCP00000035303	97.9624	97.4922
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	100	100	sus_scrofa_berkshire	ENSSSCP00065038898	100	100
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	93.6467	90.5992	equus_caballus	ENSECAP00000043526	94.3288	91.2591
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	94.2149	91.1674	bos_taurus	ENSBTAP00000017080	94.9011	91.8314
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	99.4835	99.4835	sus_scrofa_usmarc	ENSSSCP00070000874	100	100
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.7459	96.2293	sus_scrofa_wuzhishan	ENSSSCP00005021989	97.7048	97.1831
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.8492	96.3326	sus_scrofa_rongchang	ENSSSCP00030005514	97.5546	97.0343
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.7975	96.3326	sus_scrofa_jinhua	ENSSSCP00060019593	97.5026	97.0343
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.9525	96.4876	sus_scrofa_tibetan	ENSSSCP00015018788	97.3043	96.8377
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	94.3182	91.064	ovis_aries_rambouillet	ENSOARP00020014528	93.6891	90.4566
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.8492	96.3843	sus_scrofa_bamei	ENSSSCP00050012536	97.7071	97.2381
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.8492	96.3843	sus_scrofa_meishan	ENSSSCP00040037850	97.5546	97.0864
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.9525	96.4876	sus_scrofa_largewhite	ENSSSCP00025045920	97.3043	96.8377
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	94.7831	94.2665	sus_scrofa_landrace	ENSSSCP00045008633	97.1928	96.6631
ENSSSCG00035023960	sus_scrofa_hampshire	ENSSSCP00035012319	96.9525	96.4876	sus_scrofa_pietrain	ENSSSCP00055048065	97.3043	96.8377

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression