RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035022699	Gene ID	100499507	Accession	-
Symbol	AGO4	Alias	-	Full Name	argonaute RISC component 4
Status	Confidence	Length	44856 bases	Strand	Plus strand
Position	LUXS01040092.1 : 1408806 - 1453661	RNA binding domain	Piwi , PAZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035011471	Piwi	PF02171	5.5e-105	1
ENSSSCP00035011471	PAZ	PF02170	4.6e-29	2
ENSSSCP00035011505	Piwi	PF02171	6.5e-105	1
ENSSSCP00035011505	PAZ	PF02170	4.6e-29	2
ENSSSCP00035011498	Piwi	PF02171	6.6e-105	1
ENSSSCP00035011498	PAZ	PF02170	4.6e-29	2
ENSSSCP00035011494	Piwi	PF02171	6.7e-105	1
ENSSSCP00035011494	PAZ	PF02170	4.7e-29	2
ENSSSCP00035011484	Piwi	PF02171	6.9e-105	1
ENSSSCP00035011484	PAZ	PF02170	4.8e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AGO4-201	ENSSSCT00035029664	6693	857aa	ENSSSCP00035011471
AGO4-202	ENSSSCT00035029687	6885	878aa	ENSSSCP00035011484
AGO4-203	ENSSSCT00035029705	6344	865aa	ENSSSCP00035011494
AGO4-204	ENSSSCT00035029711	6323	858aa	ENSSSCP00035011498
AGO4-205	ENSSSCT00035029724	6317	856aa	ENSSSCP00035011505

Gene Model

Click here to download ENSSSCG00035022699's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035022699's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035044904	87.1412	77.1527	sus_scrofa_hampshire	ENSSSCP00035011484	86.4465	76.5376
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035014529	89.5402	82.069	sus_scrofa_hampshire	ENSSSCP00035011484	88.7244	81.3212
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035015531	86.7797	79.209	sus_scrofa_hampshire	ENSSSCP00035011484	87.4715	79.8405

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	100	100	sus_scrofa_berkshire	ENSSSCP00065002321	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	97.7221	97.3804	equus_caballus	ENSECAP00000047699	99.3056	98.9583
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	96.8109	96.2415	bos_taurus	ENSBTAP00000020250	98.9523	98.3702
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	99.8861	99.8861	sus_scrofa_usmarc	ENSSSCP00070046627	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	96.4692	96.1276	sus_scrofa_wuzhishan	ENSSSCP00005012830	99.1803	98.829
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	100	100	sus_scrofa_rongchang	ENSSSCP00030020200	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	100	100	sus_scrofa_jinhua	ENSSSCP00060003556	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	100	100	sus_scrofa_tibetan	ENSSSCP00015007119	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	98.2916	98.0638	ovis_aries_rambouillet	ENSOARP00020015395	98.6286	98.4
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	99.8861	99.8861	sus_scrofa_bamei	ENSSSCP00050024536	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	100	100	sus_scrofa_largewhite	ENSSSCP00025016748	100	100
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	97.4943	97.3804	sus_scrofa_landrace	ENSSSCP00045013176	99.8833	99.7666
ENSSSCG00035022699	sus_scrofa_hampshire	ENSSSCP00035011484	97.836	97.4943	sus_scrofa_pietrain	ENSSSCP00055046751	99.7677	99.4193

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression