RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035015584	Gene ID	100738796	Accession	-
Symbol	POLR3F	Alias	-	Full Name	RNA polymerase III subunit F
Status	Confidence	Length	18340 bases	Strand	Plus strand
Position	LUXS01021156.1 : 1302028 - 1320367	RNA binding domain	RNA_pol_Rpc34
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035007096	RNA_pol_Rpc34	PF05158	1.1e-105	1
ENSSSCP00035007104	RNA_pol_Rpc34	PF05158	7.3e-102	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR3F-201	ENSSSCT00035019860	1851	316aa	ENSSSCP00035007096
POLR3F-202	ENSSSCT00035019870	1845	323aa	ENSSSCP00035007104

Gene Model

Click here to download ENSSSCG00035015584's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035015584's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035015584

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa	ENSSSCP00000007558	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_berkshire	ENSSSCP00065031099	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	93.4985	92.8793	equus_caballus	ENSECAP00000075121	97.4194	96.7742
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.5232	96.904	bos_taurus	ENSBTAP00000011619	99.6835	99.0506
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_usmarc	ENSSSCP00070034752	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_wuzhishan	ENSSSCP00005027386	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	100	100	sus_scrofa_rongchang	ENSSSCP00030025782	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	100	100	sus_scrofa_jinhua	ENSSSCP00060002597	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	100	100	sus_scrofa_tibetan	ENSSSCP00015004025	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.2136	96.2848	ovis_aries_rambouillet	ENSOARP00020031441	99.3671	98.4177
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.5232	96.904	ovis_aries_rambouillet	ENSOARP00020029347	99.6835	99.0506
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_bamei	ENSSSCP00050024864	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_meishan	ENSSSCP00040029413	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_largewhite	ENSSSCP00025039601	100	100
ENSSSCG00035015584	sus_scrofa_hampshire	ENSSSCP00035007104	97.8328	97.8328	sus_scrofa_landrace	ENSSSCP00045028605	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression