RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035014894	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	427 bases	Strand	Minus strand
Position	LUXS01006930.1 : 165594 - 166020	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035006664	Tropomyosin	PF00261	6.4e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00035018914	279	92aa	ENSSSCP00035006664

Gene Model

Click here to download ENSSSCG00035014894's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035014894's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035048750	20.4225	16.5493	sus_scrofa_hampshire	ENSSSCP00035006664	63.0435	51.087
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035020881	22.1831	17.2535	sus_scrofa_hampshire	ENSSSCP00035006664	68.4783	53.2609
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035021033	16.7131	12.5348	sus_scrofa_hampshire	ENSSSCP00035006664	65.2174	48.913
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035040065	15.2406	11.2299	sus_scrofa_hampshire	ENSSSCP00035006664	61.9565	45.6522

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	98.913	98.913	sus_scrofa	ENSSSCP00000035272	98.913	98.913
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	93.4783	91.3043	sus_scrofa_berkshire	ENSSSCP00065006304	33.9921	33.2016
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	8.69565	4.34783	bos_taurus	ENSBTAP00000071354	9.7561	4.87805
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	2.17391	1.08696	bos_taurus	ENSBTAP00000057154	1.83486	0.917431
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	76.087	61.9565	bos_taurus	ENSBTAP00000057044	28.2258	22.9839
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	97.8261	97.8261	sus_scrofa_usmarc	ENSSSCP00070032051	97.8261	97.8261
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	98.913	98.913	sus_scrofa_wuzhishan	ENSSSCP00005038659	97.8495	97.8495
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	83.6957	71.7391	sus_scrofa_rongchang	ENSSSCP00030039391	27.0175	23.1579
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	61.9565	50	sus_scrofa_jinhua	ENSSSCP00060036188	20.0704	16.1972
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	83.6957	71.7391	sus_scrofa_tibetan	ENSSSCP00015015778	27.0175	23.1579
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	76.087	61.9565	ovis_aries_rambouillet	ENSOARP00020000074	28.2258	22.9839
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	100	100	sus_scrofa_bamei	ENSSSCP00050025648	98.9247	98.9247
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	98.913	97.8261	sus_scrofa_meishan	ENSSSCP00040033972	97.8495	96.7742
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	97.8261	97.8261	sus_scrofa_largewhite	ENSSSCP00025015339	97.8261	97.8261
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	63.0435	51.087	sus_scrofa_landrace	ENSSSCP00045045292	20.3509	16.4912
ENSSSCG00035014894	sus_scrofa_hampshire	ENSSSCP00035006664	63.0435	51.087	sus_scrofa_pietrain	ENSSSCP00055013865	20.3509	16.4912

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression