RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035012135	Gene ID		Accession	-
Symbol	EXOSC6	Alias	-	Full Name	NA
Status	Confidence	Length	1793 bases	Strand	Minus strand
Position	LUXS01002334.1 : 60055 - 61847	RNA binding domain	RNase_PH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035005205	RNase_PH	PF01138	1.3e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EXOSC6-201	ENSSSCT00035015259	1793	272aa	ENSSSCP00035005205

Gene Model

Click here to download ENSSSCG00035012135's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035012135's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035034894	46.5306	31.0204	sus_scrofa_hampshire	ENSSSCP00035005205	41.9118	27.9412
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035022216	40.8072	27.8027	sus_scrofa_hampshire	ENSSSCP00035005205	33.4559	22.7941

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa	ENSSSCP00000002934	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_berkshire	ENSSSCP00065043576	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	96.3235	94.8529	equus_caballus	ENSECAP00000068859	96.3235	94.8529
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	95.5882	94.1176	bos_taurus	ENSBTAP00000073635	95.5882	94.1176
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_rongchang	ENSSSCP00030028853	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_tibetan	ENSSSCP00015020346	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	94.8529	94.1176	ovis_aries_rambouillet	ENSOARP00020022117	94.8529	94.1176
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_bamei	ENSSSCP00050043380	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_largewhite	ENSSSCP00025003119	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_landrace	ENSSSCP00045019531	100	100
ENSSSCG00035012135	sus_scrofa_hampshire	ENSSSCP00035005205	100	100	sus_scrofa_pietrain	ENSSSCP00055000424	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression