| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00035011287 | Gene ID |
|
Accession |
- |
| Symbol |
RTCA |
Alias |
- |
Full Name |
Sus scrofa RNA 3'-terminal phosphate cyclase (RTCA), mRNA. |
| Status |
Confidence |
Length |
22962 bases |
Strand |
Minus strand |
| Position |
LUXS01011759.1 : 2575585 - 2598546 |
RNA binding domain |
RTC_insert , RTC |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00035004803 |
RTC_insert |
PF05189 |
6.7e-25 |
1 |
| ENSSSCP00035004803 |
RTC |
PF01137 |
3.1e-87 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| RTCA-201 |
ENSSSCT00035014148 |
1589 |
366aa |
ENSSSCP00035004803 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035034062 | 38 | 22.2222 | sus_scrofa_hampshire | ENSSSCP00035004803 | 46.7213 | 27.3224 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa | ENSSSCP00000073113 | 96.5699 | 96.5699 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065011031 | 100 | 100 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 96.7213 | 93.7158 | equus_caballus | ENSECAP00000017643 | 88.5 | 85.75 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 98.9071 | 97.8142 | bos_taurus | ENSBTAP00000008293 | 98.9071 | 97.8142 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070018455 | 96.5699 | 96.5699 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 87.7049 | 87.7049 | sus_scrofa_wuzhishan | ENSSSCP00005008953 | 97.2727 | 97.2727 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030003942 | 92.1914 | 92.1914 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060019318 | 92.1914 | 92.1914 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 87.7049 | 87.7049 | sus_scrofa_tibetan | ENSSSCP00015016673 | 97.2727 | 97.2727 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 98.3607 | 97.2678 | ovis_aries_rambouillet | ENSOARP00020002685 | 94.9868 | 93.9314 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 99.7268 | sus_scrofa_bamei | ENSSSCP00050011067 | 100 | 99.7268 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_meishan | ENSSSCP00040046909 | 100 | 100 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 78.1421 | 75.9563 | sus_scrofa_largewhite | ENSSSCP00025004758 | 87.1951 | 84.7561 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 96.4481 | 94.2623 | sus_scrofa_landrace | ENSSSCP00045022108 | 96.4481 | 94.2623 |
| ENSSSCG00035011287 | sus_scrofa_hampshire | ENSSSCP00035004803 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055010097 | 100 | 100 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
