RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035009760	Gene ID	100737214	Accession	-
Symbol	POLR2F	Alias	-	Full Name	RNA polymerase II subunit F
Status	Confidence	Length	61831 bases	Strand	Plus strand
Position	LUXS01038365.1 : 1547028 - 1608858	RNA binding domain	RNA_pol_Rpb6
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035004138	RNA_pol_Rpb6	PF01192	9.9e-13	1
ENSSSCP00035004135	RNA_pol_Rpb6	PF01192	2.5e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR2F-202	ENSSSCT00035012208	486	123aa	ENSSSCP00035004135
POLR2F-201	ENSSSCT00035012213	597	127aa	ENSSSCP00035004138

Gene Model

Click here to download ENSSSCG00035009760's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035009760's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035009760

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa	ENSSSCP00000000120	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_berkshire	ENSSSCP00065017212	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	81.8898	80.315	equus_caballus	ENSECAP00000059489	66.6667	65.3846
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	99.2126	bos_taurus	ENSBTAP00000006328	100	99.2126
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_usmarc	ENSSSCP00070041718	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	82.6772	80.315	sus_scrofa_wuzhishan	ENSSSCP00005000955	76.6423	74.4526
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_rongchang	ENSSSCP00030001959	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_jinhua	ENSSSCP00060019654	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	82.6772	80.315	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	99.2126	ovis_aries_rambouillet	ENSOARP00020010358	100	99.2126
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_bamei	ENSSSCP00050038608	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_meishan	ENSSSCP00040043382	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	100	100	sus_scrofa_largewhite	ENSSSCP00025017035	100	100
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	82.6772	80.315	sus_scrofa_landrace	ENSSSCP00045000578	76.6423	74.4526
ENSSSCG00035009760	sus_scrofa_hampshire	ENSSSCP00035004138	82.6772	80.315	sus_scrofa_pietrain	ENSSSCP00055025852	76.6423	74.4526

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression