RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035008312	Gene ID	100521614	Accession	-
Symbol	POLR2J	Alias	-	Full Name	RNA polymerase II subunit J
Status	Confidence	Length	4217 bases	Strand	Plus strand
Position	LUXS01018418.1 : 1732163 - 1736379	RNA binding domain	RNA_pol_L_2 , RNA_pol_L
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035003525	RNA_pol_L_2	PF13656	6.4e-29	1
ENSSSCP00035003525	RNA_pol_L	PF01193	2.9e-12	2
ENSSSCP00035003528	RNA_pol_L_2	PF13656	1.6e-28	1
ENSSSCP00035003528	RNA_pol_L	PF01193	6.5e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR2J-201	ENSSSCT00035010374	634	117aa	ENSSSCP00035003525
POLR2J-202	ENSSSCT00035010379	1721	164aa	ENSSSCP00035003528

Gene Model

Click here to download ENSSSCG00035008312's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035008312's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035045045	45.8647	27.0677	sus_scrofa_hampshire	ENSSSCP00035003528	37.1951	21.9512
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035027323	75.7143	67.8571	sus_scrofa_hampshire	ENSSSCP00035003528	64.6341	57.9268

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa	ENSSSCP00000064757	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_berkshire	ENSSSCP00065028700	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	78.0488	74.3902	bos_taurus	ENSBTAP00000060312	51.6129	49.1936
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_usmarc	ENSSSCP00070028939	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	78.0488	75	sus_scrofa_wuzhishan	ENSSSCP00005016640	53.3333	51.25
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_rongchang	ENSSSCP00030045130	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_jinhua	ENSSSCP00060018526	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_tibetan	ENSSSCP00015021581	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_bamei	ENSSSCP00050047209	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_meishan	ENSSSCP00040036876	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_largewhite	ENSSSCP00025042570	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_landrace	ENSSSCP00045043336	100	100
ENSSSCG00035008312	sus_scrofa_hampshire	ENSSSCP00035003528	100	100	sus_scrofa_pietrain	ENSSSCP00055005536	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression