RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00035002394	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	28905 bases	Strand	Plus strand
Position	LUXS01000216.1 : 4722344 - 4751248	RNA binding domain	Piwi , PAZ
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00035001042	Piwi	PF02171	1.5e-90	1
ENSSSCP00035001042	PAZ	PF02170	1.2e-30	2
ENSSSCP00035001040	Piwi	PF02171	1.9e-90	1
ENSSSCP00035001040	PAZ	PF02170	1.4e-30	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00035003014	2631	876aa	ENSSSCP00035001040
-	ENSSSCT00035003019	2488	791aa	ENSSSCP00035001042

Gene Model

Click here to download ENSSSCG00035002394's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00035002394's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035045726	66.6667	48.8966	sus_scrofa_hampshire	ENSSSCP00035001040	65.5251	48.0594
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035017906	57.9132	38.8042	sus_scrofa_hampshire	ENSSSCP00035001040	56.3927	37.7854
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035046801	49.6447	29.9492	sus_scrofa_hampshire	ENSSSCP00035001040	55.8219	33.6758

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	94.5205	93.9498	sus_scrofa	ENSSSCP00000077175	91.29	90.7387
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_berkshire	ENSSSCP00065014514	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	73.2877	59.0183	equus_caballus	ENSECAP00000016501	72.9545	58.75
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	84.589	76.5982	bos_taurus	ENSBTAP00000020633	83.2584	75.3933
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	96.1187	95.8904	sus_scrofa_usmarc	ENSSSCP00070003751	93.1416	92.9204
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.831	97.3744	sus_scrofa_wuzhishan	ENSSSCP00005046086	99.3047	98.8413
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	99.8858	99.8858	sus_scrofa_rongchang	ENSSSCP00030026592	99.8858	99.8858
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_jinhua	ENSSSCP00060024202	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_tibetan	ENSSSCP00015013876	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	79.1096	70.7763	ovis_aries_rambouillet	ENSOARP00020007054	79.2906	70.9382
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_bamei	ENSSSCP00050004515	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_meishan	ENSSSCP00040004260	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.831	97.3744	sus_scrofa_largewhite	ENSSSCP00025001572	99.3047	98.8413
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.6027	97.3744	sus_scrofa_landrace	ENSSSCP00045038120	99.1879	98.9559
ENSSSCG00035002394	sus_scrofa_hampshire	ENSSSCP00035001040	97.831	97.3744	sus_scrofa_pietrain	ENSSSCP00055006872	99.3047	98.8413

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression