Description

Ensembl ID ENSSSCG00035000629 Gene ID 100518066 Accession -
Symbol Alias - Full Name RNA polymerase I subunit A
Status Confidence Length 82530 bases Strand Minus strand
Position LUXS01002738.1 : 2387985 - 2470514 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00035000142 RNA_pol_Rpb1_4 PF05000 3.3e-25 1
ENSSSCP00035000142 RNA_pol_Rpb1_1 PF04997 5.8e-22 2
ENSSSCP00035000142 RNA_pol_Rpb1_5 PF04998 4e-70 3
ENSSSCP00035000142 RNA_pol_Rpb1_2 PF00623 3.8e-70 4
ENSSSCP00035000142 RNA_pol_Rpb1_3 PF04983 4.2e-36 5
ENSSSCP00035000143 RNA_pol_Rpb1_4 PF05000 3.6e-25 1
ENSSSCP00035000143 RNA_pol_Rpb1_1 PF04997 8.1e-22 2
ENSSSCP00035000143 RNA_pol_Rpb1_5 PF04998 1.7e-101 3
ENSSSCP00035000143 RNA_pol_Rpb1_2 PF00623 4.3e-70 4
ENSSSCP00035000143 RNA_pol_Rpb1_3 PF04983 3.3e-36 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00035000706 5816 1582aa ENSSSCP00035000142
- ENSSSCT00035000712 6108 1720aa ENSSSCP00035000143

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500342448.057630.0719sus_scrofa_hampshireENSSSCP0003500014338.837224.3023
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003502960436.537522.4289sus_scrofa_hampshireENSSSCP0003500014341.104725.2326

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofaENSSSCP0000000878299.941999.8837
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofa_berkshireENSSSCP0006502349599.941999.8837
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014395.81492.2674equus_caballusENSECAP0000000875395.81492.2674
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014395.81492.2674equus_caballusENSECAP0000004000194.876291.3644
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014395.81492.2674equus_caballusENSECAP0000006311093.265489.8132
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014396.046592.2093bos_taurusENSBTAP0000000849696.214392.3704
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.59399.5349sus_scrofa_usmarcENSSSCP0007004950499.883499.8251
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014396.162896.1628sus_scrofa_wuzhishanENSSSCP0000502099298.982698.9826
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofa_rongchangENSSSCP0003000580499.883899.8257
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.825699.7674sus_scrofa_jinhuaENSSSCP0006002923099.825699.7674
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.825699.7674sus_scrofa_tibetanENSSSCP0001501845499.825699.7674
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014394.418690.5233ovis_aries_rambouilletENSOARP0002000482896.437192.4584
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.825699.7674sus_scrofa_bameiENSSSCP0005001222399.825699.7674
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofa_meishanENSSSCP0004000021699.883899.8257
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.9419sus_scrofa_largewhiteENSSSCP0002504740599.941999.9419
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofa_landraceENSSSCP0004503328899.883899.8257
ENSSSCG00035000629sus_scrofa_hampshireENSSSCP0003500014399.941999.8837sus_scrofa_pietrainENSSSCP0005503115299.883899.8257

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression