RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00030074849	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	30240 bases	Strand	Minus strand
Position	LUXR01115069.1 : 1019304 - 1049543	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_R , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030048869	RNA_pol_Rpb1_4	PF05000	7.1e-38	1
ENSSSCP00030048869	RNA_pol_Rpb1_1	PF04997	1.1e-108	2
ENSSSCP00030048869	RNA_pol_Rpb1_5	PF04998	3e-100	3
ENSSSCP00030048869	RNA_pol_Rpb1_2	PF00623	2.3e-74	4
ENSSSCP00030048869	RNA_pol_Rpb1_3	PF04983	1.7e-49	5
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	6
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	7
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	8
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	9
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	10
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	11
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	12
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	13
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	14
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	15
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	16
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	17
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	18
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	19
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	20
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	21
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	22
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	23
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	24
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	25
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	26
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	27
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	28
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	29
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	30
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	31
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	32
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	33
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	34
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	35
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	36
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	37
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	38
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	39
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	40
ENSSSCP00030048869	RNA_pol_Rpb1_R	PF05001	1.4e-25	41
ENSSSCP00030048869	RNA_pol_Rpb1_6	PF04992	4.6e-68	42
ENSSSCP00030048869	RNA_pol_Rpb1_7	PF04990	3.9e-54	43

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030105147	6740	1942aa	ENSSSCP00030048869

Gene Model

Click here to download ENSSSCG00030074849's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030074849's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030012336	53.495	34.7361	sus_scrofa_rongchang	ENSSSCP00030048869	38.62	25.0772
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030005804	41.1389	25.276	sus_scrofa_rongchang	ENSSSCP00030048869	36.4573	22.3996

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	98.3522	98.1977	equus_caballus	ENSECAP00000057709	98.1501	97.9959
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	100	100	sus_scrofa_landrace	ENSSSCP00045037796	98.5787	98.5787
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	99.691	99.691	sus_scrofa	ENSSSCP00000024326	98.374	98.374
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	97.5798	97.5798	sus_scrofa_usmarc	ENSSSCP00070036079	97.1795	97.1795
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	93.5633	93.2029	sus_scrofa_wuzhishan	ENSSSCP00005043646	96.8034	96.4305
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	98.1462	98.1462	sus_scrofa_jinhua	ENSSSCP00060027889	97.2945	97.2945
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	99.6395	99.6395	sus_scrofa_hampshire	ENSSSCP00035029604	100	100
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	99.794	99.7425	bos_taurus	ENSBTAP00000065848	98.3756	98.3249
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	95.3141	94.3357	sus_scrofa_largewhite	ENSSSCP00025040164	93.0151	92.0603
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	99.794	99.794	sus_scrofa_meishan	ENSSSCP00040010721	98.3756	98.3756
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	100	100	sus_scrofa_berkshire	ENSSSCP00065033026	98.5787	98.5787
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	99.794	99.7425	ovis_aries_rambouillet	ENSOARP00020017833	98.3756	98.3249
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	98.1462	98.1462	sus_scrofa_bamei	ENSSSCP00050003478	97.2945	97.2945
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	98.8671	98.8157	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154
ENSSSCG00030074849	sus_scrofa_rongchang	ENSSSCP00030048869	100	100	sus_scrofa_pietrain	ENSSSCP00055021233	98.5787	98.5787

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression