RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030072832	Gene ID		Accession	-
Symbol	PCCA	Alias	-	Full Name	NA
Status	Confidence	Length	382587 bases	Strand	Minus strand
Position	LUXR01113238.1 : 4122976 - 4505562	RNA binding domain	RimK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030047307	RimK	PF08443	5e-05	1
ENSSSCP00030047360	RimK	PF08443	5.3e-05	1
ENSSSCP00030047328	RimK	PF08443	5.5e-05	1
ENSSSCP00030047314	RimK	PF08443	5.5e-05	1
ENSSSCP00030047369	RimK	PF08443	5.6e-05	1
ENSSSCP00030047271	RimK	PF08443	5.9e-05	1
ENSSSCP00030047392	RimK	PF08443	5.9e-05	1
ENSSSCP00030047350	RimK	PF08443	6.5e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PCCA-202	ENSSSCT00030102464	5758	730aa	ENSSSCP00030047271
PCCA-203	ENSSSCT00030102546	5659	697aa	ENSSSCP00030047307
PCCA-204	ENSSSCT00030102563	5641	691aa	ENSSSCP00030047314
PCCA-205	ENSSSCT00030102574	5623	685aa	ENSSSCP00030047317
PCCA-201	ENSSSCT00030102595	5661	704aa	ENSSSCP00030047328
PCCA-206	ENSSSCT00030102632	2365	683aa	ENSSSCP00030047350
PCCA-207	ENSSSCT00030102652	2851	700aa	ENSSSCP00030047360
PCCA-208	ENSSSCT00030102678	2413	712aa	ENSSSCP00030047369
PCCA-209	ENSSSCT00030102708	2362	686aa	ENSSSCP00030047381
PCCA-210	ENSSSCT00030102739	3534	643aa	ENSSSCP00030047392

Gene Model

Click here to download ENSSSCG00030072832's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030072832's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030023154	59.6774	43.1452	sus_scrofa_rongchang	ENSSSCP00030047271	20.274	14.6575
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030030121	14.3827	8.44294	sus_scrofa_rongchang	ENSSSCP00030047271	46.4384	27.2603
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030039016	14.0587	8.19071	sus_scrofa_rongchang	ENSSSCP00030047271	47.2603	27.5342
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030005263	31.48	20.6051	sus_scrofa_rongchang	ENSSSCP00030047271	52.7397	34.5205

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	95.4795	93.0137	equus_caballus	ENSECAP00000016512	89.359	87.0513
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	100	100	sus_scrofa_landrace	ENSSSCP00045047084	100	100
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	97.3973	97.3973	sus_scrofa	ENSSSCP00000044870	99.8596	99.8596
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	98.6301	98.2192	sus_scrofa_usmarc	ENSSSCP00070027441	98.4952	98.0848
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	95.6164	95.0685	sus_scrofa_wuzhishan	ENSSSCP00005021838	99.7143	99.1429
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	98.6301	98.2192	sus_scrofa_jinhua	ENSSSCP00060018145	98.4952	98.0848
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	97.5342	97.5342	sus_scrofa_hampshire	ENSSSCP00035043159	100	100
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	94.7945	90.274	bos_taurus	ENSBTAP00000067670	92.0213	87.633
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	97.2603	95.6164	sus_scrofa_largewhite	ENSSSCP00025010414	97.2603	95.6164
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	83.0137	79.0411	sus_scrofa_meishan	ENSSSCP00040025448	88.2096	83.9884
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	99.863	99.863	sus_scrofa_berkshire	ENSSSCP00065047653	99.863	99.863
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	94.9315	90.6849	ovis_aries_rambouillet	ENSOARP00020028904	93.0201	88.8591
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	100	99.863	sus_scrofa_bamei	ENSSSCP00050032372	100	99.863
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	93.6986	92.6027	sus_scrofa_tibetan	ENSSSCP00015035089	93.956	92.8571
ENSSSCG00030072832	sus_scrofa_rongchang	ENSSSCP00030047271	99.863	99.863	sus_scrofa_pietrain	ENSSSCP00055035879	99.863	99.863

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression