RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00030069090	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	17005 bases	Strand	Minus strand
Position	LUXR01078939.1 : 858643 - 875647	RNA binding domain	tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030044695	tRNA-synt_1g	PF09334	3.8e-14	1
ENSSSCP00030044695	tRNA-synt_1	PF00133	7.9e-162	2
ENSSSCP00030044695	tRNA-synt_1	PF00133	7.9e-162	3
ENSSSCP00030044695	Anticodon_1	PF08264	3.2e-31	4
ENSSSCP00030044609	tRNA-synt_1g	PF09334	4.3e-14	1
ENSSSCP00030044609	tRNA-synt_1	PF00133	8.5e-182	2
ENSSSCP00030044609	Anticodon_1	PF08264	3.3e-31	3
ENSSSCP00030044722	tRNA-synt_1g	PF09334	9.5e-12	1
ENSSSCP00030044722	tRNA-synt_1	PF00133	2.6e-162	2
ENSSSCP00030044722	Anticodon_1	PF08264	3.1e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030096751	5543	1062aa	ENSSSCP00030044609
-	ENSSSCT00030096951	3456	1028aa	ENSSSCP00030044695
-	ENSSSCT00030097028	3391	1027aa	ENSSSCP00030044722

Gene Model

Click here to download ENSSSCG00030069090's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030069090's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030036316	50.5224	39.3284	sus_scrofa_rongchang	ENSSSCP00030044609	63.7476	49.6234
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030045194	32.4834	17.8492	sus_scrofa_rongchang	ENSSSCP00030044609	27.5895	15.1601
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030029517	26.1233	11.9122	sus_scrofa_rongchang	ENSSSCP00030044609	23.5405	10.7345
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044135	24.5783	11.4859	sus_scrofa_rongchang	ENSSSCP00030044609	28.8136	13.4652
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030030846	23.0586	12.5198	sus_scrofa_rongchang	ENSSSCP00030044609	27.4011	14.8776
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030007128	34.5118	20.5387	sus_scrofa_rongchang	ENSSSCP00030044609	19.3032	11.4878
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030029273	34.4181	20.5128	sus_scrofa_rongchang	ENSSSCP00030044609	32.8625	19.5857

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	93.9736	90.5838	equus_caballus	ENSECAP00000016976	88.6323	85.4352
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.9058	sus_scrofa_landrace	ENSSSCP00045048216	99.9058	99.9058
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.8117	99.8117	sus_scrofa	ENSSSCP00000001464	99.8117	99.8117
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.9058	sus_scrofa_usmarc	ENSSSCP00070041357	99.9058	99.9058
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.8117	99.8117	sus_scrofa_wuzhishan	ENSSSCP00005030533	99.8117	99.8117
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.7175	99.5292	sus_scrofa_jinhua	ENSSSCP00060025131	99.7175	99.5292
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.8117	99.8117	sus_scrofa_hampshire	ENSSSCP00035014983	99.8117	99.8117
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	94.9153	91.9021	bos_taurus	ENSBTAP00000014160	94.6479	91.6432
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.7175	99.6234	sus_scrofa_largewhite	ENSSSCP00025049005	99.7175	99.6234
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	100	100	sus_scrofa_meishan	ENSSSCP00040047046	100	100
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.9058	sus_scrofa_berkshire	ENSSSCP00065008611	99.9058	99.9058
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	94.8211	91.7137	ovis_aries_rambouillet	ENSOARP00020024808	94.554	91.4554
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.8117	sus_scrofa_bamei	ENSSSCP00050002972	99.9058	99.8117
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.9058	sus_scrofa_tibetan	ENSSSCP00015023924	99.9058	99.9058
ENSSSCG00030069090	sus_scrofa_rongchang	ENSSSCP00030044609	99.9058	99.8117	sus_scrofa_pietrain	ENSSSCP00055048353	99.9058	99.8117

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression