RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030068590	Gene ID	100515013	Accession	-
Symbol	PHAX	Alias	-	Full Name	phosphorylated adaptor for RNA export
Status	Confidence	Length	12180 bases	Strand	Minus strand
Position	LUXR01078313.1 : 5333820 - 5345999	RNA binding domain	PHAX_RNA-bd
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030044200	PHAX_RNA-bd	PF10258	3.6e-33	1
ENSSSCP00030044210	PHAX_RNA-bd	PF10258	7.2e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PHAX-201	ENSSSCT00030095924	2368	394aa	ENSSSCP00030044200
PHAX-202	ENSSSCT00030095946	1296	366aa	ENSSSCP00030044210

Gene Model

Click here to download ENSSSCG00030068590's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030068590's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030068590

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	96.9543	94.9239	equus_caballus	ENSECAP00000062557	96.9543	94.9239
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_landrace	ENSSSCP00045010607	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa	ENSSSCP00000034615	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_usmarc	ENSSSCP00070027563	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	91.3706	91.3706	sus_scrofa_wuzhishan	ENSSSCP00005001637	98.6301	98.6301
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_jinhua	ENSSSCP00060019053	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_hampshire	ENSSSCP00035035299	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	96.4467	92.6396	bos_taurus	ENSBTAP00000035479	96.4467	92.6396
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_largewhite	ENSSSCP00025003836	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_meishan	ENSSSCP00040016387	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_berkshire	ENSSSCP00065031849	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	96.7005	92.6396	ovis_aries_rambouillet	ENSOARP00020004791	96.7005	92.6396
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_bamei	ENSSSCP00050029601	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	100	100	sus_scrofa_tibetan	ENSSSCP00015038072	100	100
ENSSSCG00030068590	sus_scrofa_rongchang	ENSSSCP00030044200	96.9543	95.6853	sus_scrofa_pietrain	ENSSSCP00055034240	96.9543	95.6853

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression