RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00030059015	Gene ID	100511993	Accession	-
Symbol	CNOT1	Alias	-	Full Name	CCR4-NOT transcription complex subunit 1
Status	Confidence	Length	89976 bases	Strand	Plus strand
Position	LUXR01113050.1 : 2303255 - 2393230	RNA binding domain	Not1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030038106	Not1	PF04054	5.5e-152	1
ENSSSCP00030038131	Not1	PF04054	5.8e-152	1
ENSSSCP00030037988	Not1	PF04054	5.9e-152	1
ENSSSCP00030038072	Not1	PF04054	6e-152	1
ENSSSCP00030038023	Not1	PF04054	6e-152	1
ENSSSCP00030037932	Not1	PF04054	6.2e-152	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CNOT1-201	ENSSSCT00030082386	584	96aa	ENSSSCP00030037833
CNOT1-207	ENSSSCT00030082567	8299	2382aa	ENSSSCP00030037932
CNOT1-205	ENSSSCT00030082676	8128	2326aa	ENSSSCP00030037988
CNOT1-206	ENSSSCT00030082773	8092	2314aa	ENSSSCP00030038023
CNOT1-204	ENSSSCT00030082885	8177	2343aa	ENSSSCP00030038072
CNOT1-203	ENSSSCT00030082952	7157	2241aa	ENSSSCP00030038106
CNOT1-202	ENSSSCT00030083008	7354	2307aa	ENSSSCP00030038131

Gene Model

Click here to download ENSSSCG00030059015's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030059015's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030059015

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	99.8321	99.7901	equus_caballus	ENSECAP00000008876	99.7902	99.7482
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_landrace	ENSSSCP00045012129	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	98.3627	98.3627	sus_scrofa	ENSSSCP00000023830	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	99.7061	99.7061	sus_scrofa_usmarc	ENSSSCP00070033044	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_wuzhishan	ENSSSCP00005028388	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_jinhua	ENSSSCP00060023884	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	99.6222	99.5382	sus_scrofa_hampshire	ENSSSCP00035048223	99.9158	99.8316
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	99.5802	99.4542	bos_taurus	ENSBTAP00000027695	99.8316	99.7054
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_largewhite	ENSSSCP00025014201	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_meishan	ENSSSCP00040017153	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_berkshire	ENSSSCP00065042211	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	99.5802	99.4542	ovis_aries_rambouillet	ENSOARP00020015887	99.8316	99.7054
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_bamei	ENSSSCP00050023331	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_tibetan	ENSSSCP00015021345	100	100
ENSSSCG00030059015	sus_scrofa_rongchang	ENSSSCP00030037932	100	100	sus_scrofa_pietrain	ENSSSCP00055004882	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression