RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030053590	Gene ID		Accession	-
Symbol	HINT3	Alias	-	Full Name	NA
Status	Confidence	Length	15503 bases	Strand	Minus strand
Position	LUXR01092554.1 : 5851512 - 5867014	RNA binding domain	DcpS_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030034198	DcpS_C	PF11969	3.8e-30	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
HINT3-201	ENSSSCT00030074745	2144	182aa	ENSSSCP00030034198

Gene Model

Click here to download ENSSSCG00030053590's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030053590's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030030721	23.8764	11.236	sus_scrofa_rongchang	ENSSSCP00030034198	46.7033	21.978

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	76.9231	70.3297	equus_caballus	ENSECAP00000014192	66.3507	60.6635
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_landrace	ENSSSCP00045008980	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa	ENSSSCP00000037637	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_wuzhishan	ENSSSCP00005028903	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_jinhua	ENSSSCP00060015513	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_hampshire	ENSSSCP00035000480	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	80.7692	76.3736	bos_taurus	ENSBTAP00000002542	80.7692	76.3736
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_largewhite	ENSSSCP00025038617	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_meishan	ENSSSCP00040037354	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_berkshire	ENSSSCP00065009416	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	77.4725	71.978	ovis_aries_rambouillet	ENSOARP00020024218	78.3333	72.7778
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_bamei	ENSSSCP00050003021	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_tibetan	ENSSSCP00015002600	100	100
ENSSSCG00030053590	sus_scrofa_rongchang	ENSSSCP00030034198	100	100	sus_scrofa_pietrain	ENSSSCP00055037786	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression