RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030051868	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	31672 bases	Strand	Plus strand
Position	LUXR01083526.1 : 457021 - 488692	RNA binding domain	MRP-S27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030032968	MRP-S27	PF10037	2.1e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030072299	2415	414aa	ENSSSCP00030032968
-	ENSSSCT00030072338	1393	277aa	ENSSSCP00030032991
-	ENSSSCT00030072356	1428	216aa	ENSSSCP00030033002

Gene Model

Click here to download ENSSSCG00030051868's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030051868's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030051868

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	85.0242	77.7778	equus_caballus	ENSECAP00000041262	92.1466	84.2932
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	95.6522	95.4106	sus_scrofa_landrace	ENSSSCP00045032332	93.1765	92.9412
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	91.7874	91.7874	sus_scrofa	ENSSSCP00000017985	99.7375	99.7375
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	95.6522	95.4106	sus_scrofa_usmarc	ENSSSCP00070027211	93.1765	92.9412
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	96.1353	95.6522	sus_scrofa_wuzhishan	ENSSSCP00005007247	93.6471	93.1765
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	96.1353	95.4106	sus_scrofa_jinhua	ENSSSCP00060019585	93.6471	92.9412
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	96.1353	95.8937	sus_scrofa_hampshire	ENSSSCP00035026743	93.6471	93.4118
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	85.9903	78.9855	bos_taurus	ENSBTAP00000019535	92.7083	85.1562
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	95.6522	95.4106	sus_scrofa_largewhite	ENSSSCP00025025541	93.1765	92.9412
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	92.029	92.029	sus_scrofa_meishan	ENSSSCP00040017229	100	100
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	95.6522	95.4106	sus_scrofa_berkshire	ENSSSCP00065044210	93.1765	92.9412
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	87.1981	79.9517	ovis_aries_rambouillet	ENSOARP00020029832	92.8021	85.09
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	92.029	92.029	sus_scrofa_bamei	ENSSSCP00050037220	100	100
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	92.029	92.029	sus_scrofa_tibetan	ENSSSCP00015019889	100	100
ENSSSCG00030051868	sus_scrofa_rongchang	ENSSSCP00030032968	91.7874	91.7874	sus_scrofa_pietrain	ENSSSCP00055041804	99.7375	99.7375

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression