RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030051572	Gene ID		Accession	-
Symbol	MRPS27	Alias	-	Full Name	NA
Status	Confidence	Length	160826 bases	Strand	Minus strand
Position	LUXR01083526.1 : 334270 - 495095	RNA binding domain	MRP-S27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030032822	MRP-S27	PF10037	3.7e-158	1
ENSSSCP00030032836	MRP-S27	PF10037	2.7e-153	1
ENSSSCP00030032859	MRP-S27	PF10037	3e-153	1
ENSSSCP00030032847	MRP-S27	PF10037	3.9e-153	1
ENSSSCP00030032876	MRP-S27	PF10037	5.5e-94	1
ENSSSCP00030032899	MRP-S27	PF10037	2.2e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPS27-202	ENSSSCT00030071985	7532	524aa	ENSSSCP00030032822
MRPS27-201	ENSSSCT00030072013	7066	395aa	ENSSSCP00030032836
MRPS27-203	ENSSSCT00030072039	2870	394aa	ENSSSCP00030032847
MRPS27-204	ENSSSCT00030072070	2207	426aa	ENSSSCP00030032859
MRPS27-205	ENSSSCT00030072097	1693	197aa	ENSSSCP00030032876
MRPS27-206	ENSSSCT00030072141	4590	200aa	ENSSSCP00030032899

Gene Model

Click here to download ENSSSCG00030051572's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030051572's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030051572

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	71.1832	64.313	equus_caballus	ENSECAP00000006254	87.1495	78.7383
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_landrace	ENSSSCP00045031459	98.022	98.022
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa	ENSSSCP00000080721	95.0959	95.0959
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_usmarc	ENSSSCP00070027124	98.022	98.022
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.3053	85.3053	sus_scrofa_wuzhishan	ENSSSCP00005007124	98.2418	98.2418
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_jinhua	ENSSSCP00060019164	98.022	98.022
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.3053	85.3053	sus_scrofa_hampshire	ENSSSCP00035026487	98.2418	98.2418
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	76.7176	71.9466	bos_taurus	ENSBTAP00000002549	85.7143	80.3838
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_largewhite	ENSSSCP00025024666	98.022	98.022
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	79.1985	79.1985	sus_scrofa_meishan	ENSSSCP00040016975	97.4178	97.4178
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_berkshire	ENSSSCP00065043827	98.022	98.022
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	74.4275	69.084	ovis_aries_rambouillet	ENSOARP00020029878	93.9759	87.2289
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	79.1985	79.1985	sus_scrofa_bamei	ENSSSCP00050037127	97.4178	97.4178
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	99.0458	99.0458	sus_scrofa_tibetan	ENSSSCP00015019078	99.0458	99.0458
ENSSSCG00030051572	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145	sus_scrofa_pietrain	ENSSSCP00055040944	98.022	98.022

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression