RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030046044	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	320 bases	Strand	Plus strand
Position	LUXR01073889.1 : 5610413 - 5610732	RNA binding domain	Ribosomal_L37e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030029380	Ribosomal_L37e	PF01907	3.8e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030064228	237	78aa	ENSSSCP00030029380

Gene Model

Click here to download ENSSSCG00030046044's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030046044's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030046044

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	51.2821	44.8718	equus_caballus	ENSECAP00000068706	54.7945	47.9452
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	100	100	sus_scrofa_landrace	ENSSSCP00045025770	100	100
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	98.7179	98.7179	sus_scrofa	ENSSSCP00000049807	98.7179	98.7179
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	53.8462	47.4359	sus_scrofa_usmarc	ENSSSCP00070041276	36.5217	32.1739
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	51.2821	44.8718	sus_scrofa_wuzhishan	ENSSSCP00005035440	33.8983	29.661
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	100	100	sus_scrofa_hampshire	ENSSSCP00035042613	100	100
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	55.1282	48.7179	sus_scrofa_largewhite	ENSSSCP00025036246	37.3913	33.0435
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	100	100	sus_scrofa_berkshire	ENSSSCP00065045486	100	100
ENSSSCG00030046044	sus_scrofa_rongchang	ENSSSCP00030029380	100	100	sus_scrofa_pietrain	ENSSSCP00055045911	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression