RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030043677	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3462 bases	Strand	Plus strand
Position	LUXR01042396.1 : 2865116 - 2868577	RNA binding domain	Ribosomal_L30 , Ribosomal_L30_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030027885	Ribosomal_L30	PF00327	1.1e-23	1
ENSSSCP00030027885	Ribosomal_L30_N	PF08079	3.1e-27	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030060945	1857	249aa	ENSSSCP00030027885

Gene Model

Click here to download ENSSSCG00030043677's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030043677's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030040121	64.7773	43.3198	sus_scrofa_rongchang	ENSSSCP00030027885	64.257	42.9719

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	97.992	94.7791	equus_caballus	ENSECAP00000044379	93.4866	90.4215
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_landrace	ENSSSCP00045013245	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	99.5984	99.1968	sus_scrofa	ENSSSCP00000078830	98.0237	97.6285
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_usmarc	ENSSSCP00070029845	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_wuzhishan	ENSSSCP00005005990	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_jinhua	ENSSSCP00060009234	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_hampshire	ENSSSCP00035016434	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_largewhite	ENSSSCP00025032958	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_meishan	ENSSSCP00040040532	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	100	100	sus_scrofa_berkshire	ENSSSCP00065008219	100	100
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	100	100	sus_scrofa_bamei	ENSSSCP00050025717	100	100
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_tibetan	ENSSSCP00015000118	98	98
ENSSSCG00030043677	sus_scrofa_rongchang	ENSSSCP00030027885	98.3936	98.3936	sus_scrofa_pietrain	ENSSSCP00055040884	98	98

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression