RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030040053	Gene ID		Accession	-
Symbol	MTERF1	Alias	-	Full Name	NA
Status	Confidence	Length	10607 bases	Strand	Plus strand
Position	LUXR01055591.1 : 7988087 - 7998693	RNA binding domain	mTERF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030025411	mTERF	PF02536	1.3e-78	1
ENSSSCP00030025418	mTERF	PF02536	1.3e-78	1
ENSSSCP00030025421	mTERF	PF02536	1.3e-78	1
ENSSSCP00030025425	mTERF	PF02536	1.3e-78	1
ENSSSCP00030025427	mTERF	PF02536	1.6e-78	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MTERF1-201	ENSSSCT00030055711	5185	378aa	ENSSSCP00030025411
MTERF1-202	ENSSSCT00030055722	3347	378aa	ENSSSCP00030025418
MTERF1-203	ENSSSCT00030055733	5490	378aa	ENSSSCP00030025421
MTERF1-204	ENSSSCT00030055743	2640	378aa	ENSSSCP00030025425
MTERF1-205	ENSSSCT00030055748	7195	401aa	ENSSSCP00030025427

Gene Model

Click here to download ENSSSCG00030040053's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030040053's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030014578	48.3117	25.4545	sus_scrofa_rongchang	ENSSSCP00030025427	46.384	24.4389

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	87.2818	79.8005	equus_caballus	ENSECAP00000058947	92.5926	84.6561
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_landrace	ENSSSCP00045023741	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa	ENSSSCP00000016236	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	97.7556	97.0075	sus_scrofa_usmarc	ENSSSCP00070026377	98.2456	97.4937
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_wuzhishan	ENSSSCP00005045841	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_jinhua	ENSSSCP00060022331	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_hampshire	ENSSSCP00035023526	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	89.5262	79.8005	bos_taurus	ENSBTAP00000054987	90.4282	80.6045
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_largewhite	ENSSSCP00025022988	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_meishan	ENSSSCP00040039131	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_berkshire	ENSSSCP00065020560	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	88.7781	80.0499	ovis_aries_rambouillet	ENSOARP00020016606	75.1055	67.7215
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_bamei	ENSSSCP00050003195	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_tibetan	ENSSSCP00015012824	100	100
ENSSSCG00030040053	sus_scrofa_rongchang	ENSSSCP00030025427	100	100	sus_scrofa_pietrain	ENSSSCP00055031682	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression