RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030037618	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	10927 bases	Strand	Plus strand
Position	LUXR01058080.1 : 531971 - 542897	RNA binding domain	Utp13
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030023919	Utp13	PF08625	8.8e-39	1
ENSSSCP00030023893	Utp13	PF08625	1e-38	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030052361	7161	862aa	ENSSSCP00030023893
-	ENSSSCT00030052430	7079	800aa	ENSSSCP00030023919

Gene Model

Click here to download ENSSSCG00030037618's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030037618's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030045157	48.4663	29.4479	sus_scrofa_rongchang	ENSSSCP00030023893	18.3295	11.1369

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	82.3666	78.0742	equus_caballus	ENSECAP00000071154	89.8734	85.1899
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	91.8793	90.2552	sus_scrofa_landrace	ENSSSCP00045045581	89.0889	87.5141
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	88.7471	87.935	sus_scrofa	ENSSSCP00000042019	96.2264	95.3459
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	89.5592	87.355	sus_scrofa_usmarc	ENSSSCP00070046782	81.6931	79.6825
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	75.7541	75.522	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.7897	98.4871
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	91.8793	90.3712	sus_scrofa_jinhua	ENSSSCP00060048824	89.0889	87.6265
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	91.8793	90.2552	sus_scrofa_hampshire	ENSSSCP00035036699	89.0889	87.5141
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	86.7749	82.3666	bos_taurus	ENSBTAP00000060788	89.1538	84.6245
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	76.6821	74.71	sus_scrofa_largewhite	ENSSSCP00025012059	90.7967	88.4615
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	87.587	86.0789	sus_scrofa_meishan	ENSSSCP00040035531	85.504	84.0317
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	91.7633	90.1392	sus_scrofa_berkshire	ENSSSCP00065038029	88.9764	87.4016
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	87.471	82.9466	ovis_aries_rambouillet	ENSOARP00020034413	93.5484	88.7097
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	91.8793	90.3712	sus_scrofa_bamei	ENSSSCP00050047419	89.0889	87.6265
ENSSSCG00030037618	sus_scrofa_rongchang	ENSSSCP00030023893	90.1392	89.7912	sus_scrofa_pietrain	ENSSSCP00055049408	97.125	96.75

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression