Description

Ensembl ID ENSSSCG00030030907 Gene ID Accession -
Symbol EXOSC1 Alias - Full Name NA
Status Confidence Length 8537 bases Strand Plus strand
Position LUXR01052260.1 : 337917 - 346453 RNA binding domain ECR1_N , EXOSC1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00030019504 ECR1_N PF14382 3.8e-09 1
ENSSSCP00030019504 EXOSC1 PF10447 1.2e-14 2
ENSSSCP00030019484 ECR1_N PF14382 3.4e-07 1
ENSSSCP00030019484 EXOSC1 PF10447 2e-14 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
EXOSC1-201 ENSSSCT00030042890 2645 255aa ENSSSCP00030019484
EXOSC1-202 ENSSSCT00030042933 2522 214aa ENSSSCP00030019504

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030030907

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948465.882462.7451equus_caballusENSECAP0000004984778.504774.7664
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948499.607899.6078sus_scrofa_landraceENSSSCP0004500645099.607899.6078
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948472.54972.1569sus_scrofaENSSSCP0000006458894.871894.359
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948483.921683.9216sus_scrofa_usmarcENSSSCP00070025766100100
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP00030019484100100sus_scrofa_wuzhishanENSSSCP00005046842100100
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948499.607899.6078sus_scrofa_jinhuaENSSSCP0006001945699.607899.6078
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948476.470676.4706sus_scrofa_hampshireENSSSCP00035009727100100
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948476.470675.2941bos_taurusENSBTAP0000001687910098.4615
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948499.215799.2157sus_scrofa_largewhiteENSSSCP0002504505799.215799.2157
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948476.470676.4706sus_scrofa_meishanENSSSCP00040023105100100
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948499.215799.2157sus_scrofa_berkshireENSSSCP0006500976699.215799.2157
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948476.078474.902ovis_aries_rambouilletENSOARP0002002198099.487297.9487
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948499.607899.6078sus_scrofa_bameiENSSSCP0005004123699.607899.6078
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP00030019484100100sus_scrofa_tibetanENSSSCP00015012458100100
ENSSSCG00030030907sus_scrofa_rongchangENSSSCP0003001948476.470676.4706sus_scrofa_pietrainENSSSCP00055031182100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression