RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00030030907 | Gene ID |
|
Accession |
- |
Symbol |
EXOSC1 |
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
8537 bases |
Strand |
Plus strand |
Position |
LUXR01052260.1 : 337917 - 346453 |
RNA binding domain |
ECR1_N , EXOSC1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00030019504 |
ECR1_N |
PF14382 |
3.8e-09 |
1 |
ENSSSCP00030019504 |
EXOSC1 |
PF10447 |
1.2e-14 |
2 |
ENSSSCP00030019484 |
ECR1_N |
PF14382 |
3.4e-07 |
1 |
ENSSSCP00030019484 |
EXOSC1 |
PF10447 |
2e-14 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
EXOSC1-201 |
ENSSSCT00030042890 |
2645 |
255aa |
ENSSSCP00030019484 |
EXOSC1-202 |
ENSSSCT00030042933 |
2522 |
214aa |
ENSSSCP00030019504 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00030030907 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 65.8824 | 62.7451 | equus_caballus | ENSECAP00000049847 | 78.5047 | 74.7664 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 99.6078 | 99.6078 | sus_scrofa_landrace | ENSSSCP00045006450 | 99.6078 | 99.6078 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 72.549 | 72.1569 | sus_scrofa | ENSSSCP00000064588 | 94.8718 | 94.359 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 83.9216 | 83.9216 | sus_scrofa_usmarc | ENSSSCP00070025766 | 100 | 100 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 100 | 100 | sus_scrofa_wuzhishan | ENSSSCP00005046842 | 100 | 100 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 99.6078 | 99.6078 | sus_scrofa_jinhua | ENSSSCP00060019456 | 99.6078 | 99.6078 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 76.4706 | 76.4706 | sus_scrofa_hampshire | ENSSSCP00035009727 | 100 | 100 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 76.4706 | 75.2941 | bos_taurus | ENSBTAP00000016879 | 100 | 98.4615 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 99.2157 | 99.2157 | sus_scrofa_largewhite | ENSSSCP00025045057 | 99.2157 | 99.2157 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 76.4706 | 76.4706 | sus_scrofa_meishan | ENSSSCP00040023105 | 100 | 100 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 99.2157 | 99.2157 | sus_scrofa_berkshire | ENSSSCP00065009766 | 99.2157 | 99.2157 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 76.0784 | 74.902 | ovis_aries_rambouillet | ENSOARP00020021980 | 99.4872 | 97.9487 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 99.6078 | 99.6078 | sus_scrofa_bamei | ENSSSCP00050041236 | 99.6078 | 99.6078 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015012458 | 100 | 100 |
ENSSSCG00030030907 | sus_scrofa_rongchang | ENSSSCP00030019484 | 76.4706 | 76.4706 | sus_scrofa_pietrain | ENSSSCP00055031182 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |