RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030029188	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	41128 bases	Strand	Plus strand
Position	LUXR01058771.1 : 169964 - 211091	RNA binding domain	RimK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030018577	RimK	PF08443	7.2e-40	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030040656	4094	392aa	ENSSSCP00030018577

Gene Model

Click here to download ENSSSCG00030029188's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030029188's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030021949	82.9016	67.6166	sus_scrofa_rongchang	ENSSSCP00030018577	81.6327	66.5816

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	86.2245	79.5918	equus_caballus	ENSECAP00000076193	84.0796	77.6119
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_landrace	ENSSSCP00045008372	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	99.7449	sus_scrofa	ENSSSCP00000075484	100	99.7449
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	99.7449	sus_scrofa_usmarc	ENSSSCP00070049852	100	99.7449
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	78.0612	74.7449	sus_scrofa_wuzhishan	ENSSSCP00005016607	69.3878	66.4399
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_jinhua	ENSSSCP00060030309	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	99.7449	sus_scrofa_hampshire	ENSSSCP00035041813	100	99.7449
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	97.1939	93.8775	bos_taurus	ENSBTAP00000023262	97.4425	94.1176
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_largewhite	ENSSSCP00025006073	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_meishan	ENSSSCP00040003471	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_berkshire	ENSSSCP00065006754	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	96.1735	93.1122	ovis_aries_rambouillet	ENSOARP00020000084	97.1649	94.0722
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_bamei	ENSSSCP00050010906	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_tibetan	ENSSSCP00015038675	100	100
ENSSSCG00030029188	sus_scrofa_rongchang	ENSSSCP00030018577	100	100	sus_scrofa_pietrain	ENSSSCP00055020477	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression