RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00030027451	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	25855 bases	Strand	Plus strand
Position	LUXR01042632.1 : 1231400 - 1257254	RNA binding domain	tRNA-synt_1g
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030017650	tRNA-synt_1g	PF09334	0.00034	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030038399	834	278aa	ENSSSCP00030017650

Gene Model

Click here to download ENSSSCG00030027451's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030027451's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030011342	53.8095	30.9524	sus_scrofa_rongchang	ENSSSCP00030017650	40.6475	23.3813
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017753	55.597	39.1791	sus_scrofa_rongchang	ENSSSCP00030017650	53.5971	37.7698
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030019801	49.7382	28.7958	sus_scrofa_rongchang	ENSSSCP00030017650	34.1727	19.7842

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	66.9065	57.9137	equus_caballus	ENSECAP00000036871	63.6986	55.137
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	98.5611	97.482	sus_scrofa_landrace	ENSSSCP00045014322	93.5154	92.4915
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	100	99.6403	sus_scrofa	ENSSSCP00000027661	94.8805	94.5392
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	98.5611	97.482	sus_scrofa_usmarc	ENSSSCP00070036165	93.5154	92.4915
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	99.6403	99.6403	sus_scrofa_wuzhishan	ENSSSCP00005010642	100	100
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	98.2014	97.482	sus_scrofa_jinhua	ENSSSCP00060036654	93.1741	92.4915
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	98.5611	97.482	sus_scrofa_hampshire	ENSSSCP00035007226	93.5154	92.4915
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	85.2518	75.1799	bos_taurus	ENSBTAP00000057283	83.7456	73.8516
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	99.6403	99.2806	sus_scrofa_largewhite	ENSSSCP00025041034	99.6403	99.2806
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	99.2806	99.2806	sus_scrofa_meishan	ENSSSCP00040025671	99.639	99.639
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	98.5611	97.482	sus_scrofa_berkshire	ENSSSCP00065031236	93.5154	92.4915
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	53.9568	47.8417	ovis_aries_rambouillet	ENSOARP00020012633	87.7193	77.7778
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	99.6403	99.6403	sus_scrofa_bamei	ENSSSCP00050013155	100	100
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	99.6403	99.6403	sus_scrofa_tibetan	ENSSSCP00015029735	100	100
ENSSSCG00030027451	sus_scrofa_rongchang	ENSSSCP00030017650	100	99.6403	sus_scrofa_pietrain	ENSSSCP00055020900	100	99.6403

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression