RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030019644	Gene ID	100512374	Accession	-
Symbol		Alias	-	Full Name	mitochondrial transcription termination factor 4
Status	Confidence	Length	5818 bases	Strand	Plus strand
Position	LUXR01036392.1 : 523369 - 529186	RNA binding domain	mTERF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030012065	mTERF	PF02536	8.7e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030027110	1780	354aa	ENSSSCP00030012065

Gene Model

Click here to download ENSSSCG00030019644's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030019644's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030019644

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	55.0847	48.0226	equus_caballus	ENSECAP00000009412	75.5814	65.8915
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	98.3051	97.7401	sus_scrofa	ENSSSCP00000017354	87.8788	87.3737
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	96.3277	96.3277	sus_scrofa_usmarc	ENSSSCP00070008757	87.6607	87.6607
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	87.2881	87.2881	sus_scrofa_wuzhishan	ENSSSCP00005014352	86.3129	86.3129
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	100	100	sus_scrofa_jinhua	ENSSSCP00060041236	100	100
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	100	100	sus_scrofa_hampshire	ENSSSCP00035041273	100	100
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	82.2034	75.1412	bos_taurus	ENSBTAP00000072085	84.593	77.3256
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	95.4802	95.1977	sus_scrofa_largewhite	ENSSSCP00025046040	87.5648	87.3057
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	100	99.7175	sus_scrofa_meishan	ENSSSCP00040039248	98.0609	97.7839
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	100	100	sus_scrofa_berkshire	ENSSSCP00065045763	100	100
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	100	99.7175	sus_scrofa_bamei	ENSSSCP00050022810	98.0609	97.7839
ENSSSCG00030019644	sus_scrofa_rongchang	ENSSSCP00030012065	99.435	99.435	sus_scrofa_pietrain	ENSSSCP00055041865	99.435	99.435

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression