RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030019107	Gene ID		Accession	-
Symbol	AFF4	Alias	-	Full Name	NA
Status	Confidence	Length	85455 bases	Strand	Plus strand
Position	LUXR01027131.1 : 758741 - 844195	RNA binding domain	AF-4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030011791	AF-4	PF05110	1.8e-173	1
ENSSSCP00030011786	AF-4	PF05110	4.1e-138	1
ENSSSCP00030011786	AF-4	PF05110	4.1e-138	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AFF4-201	ENSSSCT00030026389	6921	1135aa	ENSSSCP00030011786
AFF4-202	ENSSSCT00030026405	5681	1164aa	ENSSSCP00030011791

Gene Model

Click here to download ENSSSCG00030019107's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030019107's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030043811	49.4191	35.6313	sus_scrofa_rongchang	ENSSSCP00030011791	54.811	39.5189
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030023277	50.9788	36.6232	sus_scrofa_rongchang	ENSSSCP00030011791	53.6942	38.5739

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	98.3677	96.6495	equus_caballus	ENSECAP00000035991	97.6962	95.9898
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	97.5086	97.079	sus_scrofa_landrace	ENSSSCP00045006036	99.387	98.9492
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa	ENSSSCP00000020038	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_usmarc	ENSSSCP00070033678	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_wuzhishan	ENSSSCP00005007066	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	97.5086	97.079	sus_scrofa_jinhua	ENSSSCP00060033576	99.387	98.9492
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_hampshire	ENSSSCP00035008216	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	98.9691	98.11	bos_taurus	ENSBTAP00000012480	98.9691	98.11
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_largewhite	ENSSSCP00025031371	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_meishan	ENSSSCP00040011497	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	97.5086	97.079	sus_scrofa_berkshire	ENSSSCP00065013702	99.387	98.9492
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	98.9691	98.2818	ovis_aries_rambouillet	ENSOARP00020027206	99.0542	98.3663
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_bamei	ENSSSCP00050044347	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_tibetan	ENSSSCP00015029903	100	100
ENSSSCG00030019107	sus_scrofa_rongchang	ENSSSCP00030011791	100	100	sus_scrofa_pietrain	ENSSSCP00055006215	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression